Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04625 ATGAGAACACGACTACAACAATTGCATGTAGACAAAAATGAGCAGGAACTTATGGGTTGCGGAACTAAAATTTCGGGTCAATCAGGCTCGTCGAGCAGGAGTGAGCAGACGACTGGGATACTTACCGGTGATAATGCTGCGCTCGAATTAAACCATCTTGACATACATGACAATGATGCTGGATCACGGGGAGCAGTTGTTGTCGACAGTCGACACAGTTGCAAGAAGAAAAAGAAGGGCCAACAACAGGTGTCTGAAGTTACCATGAAAGTGTTCGAAAAGATAGAAAGGAAGGGAAAAACAACTTTCAATGAGGTGGCAGATGAACTTGTGGCTGAACTTTCTGATCCAATGAATAGTGTTTTGTCCCCCGATAAGAAACAATATGATGAGAAAAACATCCGTCGAAGGACCTATGATGTTCTGAATGTTCTCGCGGCAACTGATATTATTTCCAAGGATAAAAAGGAAATAAAATGGAAGGGTCTTTCTACTCCTAGTCCTATTGAGGAGCTAAAGACGGAGCGTCTTGGGATCAGGAATAGAATTGAAAGCAAAGCATCCTATCTAAAGGAGCTTGAGGAACAATTTGTAGGTCTTAAGAACCTTGTTCAACGAAATGAGCAACTATATAGATCAGAAAATCCTCCCAACGGAGGTTTATCTTTACCTTTTGTTCTGGTACAGACGCATCCTCATGCAACTGTTGAACTTGAAGTGGAAATATCAGAAGACAATCAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCATTTTCAACTGTATGATGACAATTATGTGCTCAAAGCAATGGAACTTTGTGATAGACCTCAGAGTGATATTGTTACGCTTAATGTTACGGAAGAAGGGGAAGGTTCTAGCTTGTCAGGCTTGCATCAGTTACAGGTTCTTCCTTCAGTTCCTGGAATACTAAAGAACAATACGATGGATTCAAACAAAAGGCGCAAATGTGGTTCGAGTTTGACATTATCTGGTATTACTAATGTTACTTCTTCATCATTGCGTTCACAAGTGTCCAACAACAATGTGTTTCGCAAACCCTTGCCTATTGGGCCTGGTAAATATGTTCTCAAGCACCCCAGAAGCCCACATAGAAGATACGAAAATTCTCCAACGAATTTCGACATATCTAACAATAAGGAAATATATGTGGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCTGATAATAATTCTGTGTCCAGCAATGTGTTTCGAAAACCTTTGCTCAAGCGCCCCAGAAGCCTACATAGAAGAGACGAAAGTTCTCCAATGAATTTCGACATATCTAACAATAAGGAAATATATGTAGAATGCAACGAGAATGGCGAAGAGTATGATGTTCCAGACAATAATTTGGGTATGTCTTACACCATACAATACTTTAACTTTTAA 1425 0.3986 MRTRLQQLHVDKNEQELMGCGTKISGQSGSSSRSEQTTGILTGDNAALELNHLDIHDNDAGSRGAVVVDSRHSCKKKKKGQQQVSEVTMKVFEKIERKGKTTFNEVADELVAELSDPMNSVLSPDKKQYDEKNIRRRTYDVLNVLAATDIISKDKKEIKWKGLSTPSPIEELKTERLGIRNRIESKASYLKELEEQFVGLKNLVQRNEQLYRSENPPNGGLSLPFVLVQTHPHATVELEVEISEDNQDMQLVHFDFNSTHFQLYDDNYVLKAMELCDRPQSDIVTLNVTEEGEGSSLSGLHQLQVLPSVPGILKNNTMDSNKRRKCGSSLTLSGITNVTSSSLRSQVSNNNVFRKPLPIGPGKYVLKHPRSPHRRYENSPTNFDISNNKEIYVECNENGEEYDVPDNNSVSSNVFRKPLLKRPRSLHRRDESSPMNFDISNNKEIYVECNENGEEYDVPDNNLGMSYTIQYFNF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04625 474 FunFam Transcription factor Dp-1, a 74 167 - -
Trre14g04625 474 SMART DP_2 167 319 IPR014889 -
Trre14g04625 474 Coils Coil 190 210 - -
Trre14g04625 474 CDD DP_DD 169 273 IPR014889 -
Trre14g04625 474 FunFam Transcription factor-like protein DPB 166 295 - -
Trre14g04625 474 SUPERFAMILY E2F-DP heterodimerization region 169 283 IPR037241 -
Trre14g04625 474 SUPERFAMILY "Winged helix" DNA-binding domain 85 163 IPR036390 -
Trre14g04625 474 Pfam Transcription factor DP 169 281 IPR014889 -
Trre14g04625 474 PANTHER TRANSCRIPTION FACTOR DP 28 281 IPR015648 GO:0005667|GO:0051726
Trre14g04625 474 Gene3D Transcription factor DP 168 294 IPR038168 -
Trre14g04625 474 Pfam E2F/DP family winged-helix DNA-binding domain 87 162 IPR003316 GO:0005667|GO:0006355
Trre14g04625 474 SMART E2F_TDP_2 79 162 IPR003316 GO:0005667|GO:0006355
Trre14g04625 474 Gene3D - 72 167 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04625 Trre-Chr14 53955214 53958776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04625 63 274 E2F-DP Transcription Factor Family AT5G02470 41.818 1.22e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre14g04625 DP 1.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04625 K04683 - zju:107414839 357.836