Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04622 ATGGTCTCTCTCAAACTCCAAAAGCGTCTCGCTTCCAGCGTCCTCAAGTGCGGTAGAGGCAAAGTTTGGCTAGATCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATTAGGAAGCTGGTTAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCATTCCCGATCACGTGCTCGTCGTATGAAGGAAGCTAAGAGGAAAGGAAGACACTCTGGATATGGTAAAAGGAAGGGTACAAGGGAGGCAAGGCTTCCAACAAAGATCCTTTGGATGAGGAGAATGCGTGTGCTTAGACGCTTGCTCCGCAAGTACCGGGAGTCTAAGAAAATTGATAAGCACATGTATCATGACATGTATATGAAGGTTAAGGGTAACGTCTTTAAGAATAAGAGAGTTCTAATGGAGAGTATCCACAAATCTAAAGCTGAGAAGGCTAGAGAGAAGACCTTATCTGACCAGTTCGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGGAAGTTTGCTCGGAGGGAGGAACGTTTCGCTCAAGGTCCCGGAGGAGAGAAGCCAGCAGATGCTCCTACTGCTCCACCTGCTACAGCAGCACAGCCTACCCAACCATCAAAGAAATCTAAGAAGGGAGCGGCAGTCTGA 654 0.4755 MVSLKLQKRLASSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGGEKPADAPTAPPATAAQPTQPSKKSKKGAAV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04622 217 FunFam Ribosomal protein L19 57 189 - -
Trre14g04622 217 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g04622 217 MobiDBLite consensus disorder prediction 149 217 - -
Trre14g04622 217 MobiDBLite consensus disorder prediction 149 185 - -
Trre14g04622 217 PANTHER 60S RIBOSOMAL PROTEIN L19 1 189 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trre14g04622 217 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g04622 217 MobiDBLite consensus disorder prediction 57 85 - -
Trre14g04622 217 FunFam Ribosomal protein L19 1 56 - -
Trre14g04622 217 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Trre14g04622 217 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Trre14g04622 217 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trre14g04622 217 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Trre14g04622 217 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trre14g04622 217 Gene3D - 57 186 - -
Trre14g04622 217 MobiDBLite consensus disorder prediction 57 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04622 Trre-Chr14 53939625 53941277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04622 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.038 9.97e-128 357