Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04608 ATGGGTTGGAAGATCTTCTCAATTGCTACATTGTCATTTTTGTTTCTCATTCCCTTCTTTGCATTTCTAGCTACTGCAAATGACATCCTTGTCCCTCAAGAAACCATTTGTGAATCCTCCCACTACCCATCTTATTGTAGAAATATTCTTCCAAAACAAAAAGCCAAAGTACATGACTTTGCTAGATTCTCAATTCAAAAATCCATGTTTCAATCCCATAAGTTTTTCAACTCATTGAAATTCTATCTTGGTTCTAGTACTTTATCTAAAGAGACAATAAATGTTCTAAAAGATTGTTTATTCCTCTCTCAACTCACCTCACAATACTTGTCAAAATCAAATTACATTGCACTCAAAAACACTAATAATACTATCTACACCTCCCAAGTTGATGATACTCAAACCCTTCTTAGTGCAGTTATAACAAATCATCAAACATGTTTAGATGGACTAATGACCGTGGCTAATTCCAATTTAACCATAAAAAATTATCTTATTAGCCAACTCTCTAATGATAACAAACTTCATAGTGTTTCACTTGCTTTGTTCACAAAGGGTTGGATGCATGAAAAAAAGAACAAGACATTATGGAATTCTAGAGGGTGGCACTATGGTAATTTTAGAAATGGTAGATTACCTTTGAAGATGTCAAATCGTACTAGAGCCATTTATGATTCATCAAGAGGCAGAGGAAAAACTCATGATGATGATCATGATGATGATGATGAAGGTGGTGTTTTGGTTAGGGACATTGTTGTTGTTAGTAAAGATGGGAGTGGAAACTTTACAACTATCAATGATGCTGTTGCTGCTGCTCCAAATAACACTATTAATGCAACAAATGGATATTTCTTGATTTTTATCAAAGAAGGTGTTTATGAAGAATATGTGTCTATCCCTCAAAACAAGGCATACTTAATGATGATCGGAGACGGAATCAATCAAACAGTTATCACCGGCAACCATAGCGTTGGTGATGGATGGACAACTTTTAATTCCCCAACATTTGCTGTGGCAGCACCAGGGTTTGTAGCCGTTAACATAACATTTCGGAACACCGCTGGACCGAGCAAATTCCAAGCAGTTGCAATGAGAAGTGGAGCAGACATGTCGACTTTCTATCGTTGCAGCTTTGAAGGGTACCAAGATACTCTCTATACACATTCACTAAGACAATTTTATAAAGAATGTGATATATATGGAACAATTGATTTCATATTTGGAAACGCCGTAGTTGTTTTGCAAAACTGCAACATATATCCTCGTCTTCCTTTATCGGGACAGTTCAACCCGATTACTGCTCAAGGACGAACCGATCCAAATCAAAACACTGGTATTTCCATTCACAATTGCACTATTAAACCAGCTCAAGATTTAGTTACTAGTGTTGGCATTGTGAAAACTTACCTTGGGAGACCATGGAAAGAGTATTCAAGAACTGTTGTTATGCAATCTTTCTTGGATAATTTGATAGAACCAAGTGGTTGGTCTATATGGAGTGGTGATTTTGCACTCTCTACTTTGTATTATGCAGAGTATGATAATAGAGGACCAGGTGCAAATATTTCCAATAGAGTTACATGGCAAGGGTACCATGTGATTAATGCTACTGATGCTGCTAATTTTACAGTTGATAATTTTCTGCATGGGAATGATTGGTTGCCTCAAATTGGAGTTCCTTATATTAATTGA 1692 0.3629 MGWKIFSIATLSFLFLIPFFAFLATANDILVPQETICESSHYPSYCRNILPKQKAKVHDFARFSIQKSMFQSHKFFNSLKFYLGSSTLSKETINVLKDCLFLSQLTSQYLSKSNYIALKNTNNTIYTSQVDDTQTLLSAVITNHQTCLDGLMTVANSNLTIKNYLISQLSNDNKLHSVSLALFTKGWMHEKKNKTLWNSRGWHYGNFRNGRLPLKMSNRTRAIYDSSRGRGKTHDDDHDDDDEGGVLVRDIVVVSKDGSGNFTTINDAVAAAPNNTINATNGYFLIFIKEGVYEEYVSIPQNKAYLMMIGDGINQTVITGNHSVGDGWTTFNSPTFAVAAPGFVAVNITFRNTAGPSKFQAVAMRSGADMSTFYRCSFEGYQDTLYTHSLRQFYKECDIYGTIDFIFGNAVVVLQNCNIYPRLPLSGQFNPITAQGRTDPNQNTGISIHNCTIKPAQDLVTSVGIVKTYLGRPWKEYSRTVVMQSFLDNLIEPSGWSIWSGDFALSTLYYAEYDNRGPGANISNRVTWQGYHVINATDAANFTVDNFLHGNDWLPQIGVPYIN 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04608 563 FunFam Pectinesterase 246 563 - -
Trre14g04608 563 PANTHER PECTINESTERASE 20 555 - -
Trre14g04608 563 SMART PMEI_2 26 182 IPR006501 GO:0004857
Trre14g04608 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 185 IPR035513 -
Trre14g04608 563 CDD PMEI-like_3 35 187 - -
Trre14g04608 563 SUPERFAMILY Pectin lyase-like 249 562 IPR011050 -
Trre14g04608 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 185 IPR035513 -
Trre14g04608 563 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Trre14g04608 563 Pfam Plant invertase/pectin methylesterase inhibitor 34 170 IPR006501 GO:0004857
Trre14g04608 563 Pfam Pectinesterase 252 551 IPR000070 GO:0030599|GO:0042545
Trre14g04608 563 Gene3D - 250 563 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04608 Trre-Chr14 53864645 53866558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04608 14 563 Carbohydrate Esterase AT4G02330 58.172 0.0 655