Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04607 ATGGCGTTCAAAAAAATTTCCTTTCTTACACTCTTCTTTTCTCTCTCACTTTCCATCTTATCATCTCTAGCTGATAATAATTCTAAGATCCCACCACAAAAAATATGCGACTCCACCGTAGACCCTACATTTTGCAAAACTCTACTTGCTAACCAAAACGGCACCGTAATTGACTATGGTCGATTTTCTATCCGAAAATCCTTATCTCAATCACGAAATTTATTAAACTTAGTAAATTCACATCTTCAAAATAAATCATCTTTGTCACAACCCACAATTTCAGCCCTTCAAGATTGTCAATTCCTAGCTCAACAAAATTTTGAATATTTATCAAACACTCATCAAACTGCTAATAGTACTAGCAATGTTCTTTCCATTTCTCAAAGTGAAGAATTTCAAACAATTCTTAGTGCTGTTTTAACAAACCAACAAACATGTTTAGATGGTTTAAGCATCACAAATTCTGATCAAACGGCGATTAATGATTTAACTTCGACACTTTCAAACGATGCAAAGATTCATAGTGTGTCACTTGCTCTATTTTTAAAGGGTTGGGTTCGTGACAACAAAAAACAAACATCGTGGCCACAAAATGGAAGACATTTGAATTTTCGTAACGGTCGTTTACCGTTGAAAATGTCAAATGGGGCACGTGCTATTTATGATTCAGCTAGAAATCGACGACATGGGAGAAAATTACTTCAAACAGTTGATGAAAGTGTTACGGTAAGTGAAATCGTGGTTGTTAATCAAGATGGAAGCGGAAATTTTACAACTATTAATGATGCTATAAACGTTGCACCAAATAACACGGTTGCTAGTAGTGGTTACTTTCTTATTTTTGTTACTGAGGGTGTGTATCAAGAGTATATATCTATACCGAAAAATAAGAAGTATTTGATGATGGTTGGAGATGGGATTAATCGAACAATTATCACCGGTGATCACAATGTTGTTGATAATTTTACAACATTCAACTCAGCAACATTTGCTGTGGTGTCACAAGGTTTTTTGGCAGTCAACATAACATTCCGCAACACGGCCGGGCCAATCAAACACCAAGCCGTCGCAGTAAGAAACGGAGCTGATCTATCCACATTCTACAGCTGTAGTTTCGAAGGTTATCAAGACACATTATACACACATTCCATGAGACAATTTTATAGCGAATGCGATATCTATGGCACAGTTGACTTCATATTTGGAAACGCTGCAGTTGTTTTCCAAAATTGCAACTTATATCCCCGTCTTCCTAGTACTGGACAATTCAACGCTATAACCGCTCAAGGTCGAACTGATCCAAATCAAAACACAGGAACTTCCATACATAATGCAACTATAAAAGCCGCAGATGATTTAGCTCCGATGATCGGTACAGTTAAAACATACCTTGGTAGACCATGGAAAGAGTACTCAAGGACAGTTTATTTGCAATGTTTTATGGACAGTTTGATAGATCCTTCTGGTTGGCGTGAATGGAGTGGAGATTTTGCATTAAACACATTGTATTATGCAGAGTATAATAATACAGGACCTGGTTCAAATACTTCCAATAGAGTTACATGGCAAGGGTACCAAGTGATTAATGCTACTGATGCTGCTAATTTTACAGTGTCTAACTTTTTGGATGGAGATAGTTGGTTGCCTCAAACTGGTGTTCCATACTCTAGTGGATTGATATAA 1683 0.3684 MAFKKISFLTLFFSLSLSILSSLADNNSKIPPQKICDSTVDPTFCKTLLANQNGTVIDYGRFSIRKSLSQSRNLLNLVNSHLQNKSSLSQPTISALQDCQFLAQQNFEYLSNTHQTANSTSNVLSISQSEEFQTILSAVLTNQQTCLDGLSITNSDQTAINDLTSTLSNDAKIHSVSLALFLKGWVRDNKKQTSWPQNGRHLNFRNGRLPLKMSNGARAIYDSARNRRHGRKLLQTVDESVTVSEIVVVNQDGSGNFTTINDAINVAPNNTVASSGYFLIFVTEGVYQEYISIPKNKKYLMMVGDGINRTIITGDHNVVDNFTTFNSATFAVVSQGFLAVNITFRNTAGPIKHQAVAVRNGADLSTFYSCSFEGYQDTLYTHSMRQFYSECDIYGTVDFIFGNAAVVFQNCNLYPRLPSTGQFNAITAQGRTDPNQNTGTSIHNATIKAADDLAPMIGTVKTYLGRPWKEYSRTVYLQCFMDSLIDPSGWREWSGDFALNTLYYAEYNNTGPGSNTSNRVTWQGYQVINATDAANFTVSNFLDGDSWLPQTGVPYSSGLI 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04607 560 FunFam Pectinesterase 33 183 - -
Trre14g04607 560 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857
Trre14g04607 560 CDD PMEI-like_3 35 185 - -
Trre14g04607 560 Pfam Pectinesterase 247 545 IPR000070 GO:0030599|GO:0042545
Trre14g04607 560 SUPERFAMILY Pectin lyase-like 242 558 IPR011050 -
Trre14g04607 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 183 IPR035513 -
Trre14g04607 560 Gene3D - 240 559 IPR012334 -
Trre14g04607 560 PANTHER PECTINESTERASE 20 549 - -
Trre14g04607 560 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Trre14g04607 560 SMART PMEI_2 27 180 IPR006501 GO:0004857
Trre14g04607 560 FunFam Pectinesterase 240 559 - -
Trre14g04607 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 181 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04607 Trre-Chr14 53852745 53855031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04607 5 560 Carbohydrate Esterase AT4G02330 59.792 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04607 K01051 - gmx:100813051 868.611