Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04604 ATGGCTTCTGACCCAAACATTGAAGCAAAGTATGCCCTTAACGCTAAAGTCATGGTAGGCTCTTCTGTCCTTCTCTTCATACTCATAATCATCGTTGTTCTCTTTCGCACTTACGTCTACCTCTGCCACCATCGCCGCCACCGTCAATTCTCTCAACAATCTCTTACAACCACCACTTTCAAAGAAGAACGTCTCGACCCTTCTGTTCTCAAATCTATTCCTACTTTTATGTTCTCATCCTCGGCCACCCGCCGTGCTCTCCACGACTGCGCTGTCTGCTTGTCGGAGTTCACCGACGGTGATGTGTGCCGTACGCTTCCAAACTGTAACCACGATTTTCATTCTCAGTGTATCGATATGTGGCTCGGTTCTCATTCCAATTGTCCTCTTTGCCGAACTCCGGTTCAACCTACGACGGTTCACTCTCGTACTGAACCGGGCGCTGTTTCGGGTTCAGAAGAACCGGGTGAAGGTTGTTCGAATTTTCTTGAACCGGTTGGGTGTCCAAGAAAGCCGTTTAGTGTAGTTGTAGAGTTACCGCCACCAGAGATAGTCCGGGTCGGTTCACGCACCCGAAGATAA 582 0.4914 MASDPNIEAKYALNAKVMVGSSVLLFILIIIVVLFRTYVYLCHHRRHRQFSQQSLTTTTFKEERLDPSVLKSIPTFMFSSSATRRALHDCAVCLSEFTDGDVCRTLPNCNHDFHSQCIDMWLGSHSNCPLCRTPVQPTTVHSRTEPGAVSGSEEPGEGCSNFLEPVGCPRKPFSVVVELPPPEIVRVGSRTRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04604 193 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre14g04604 193 SMART ring_2 90 131 IPR001841 -
Trre14g04604 193 Pfam Ring finger domain 89 132 IPR001841 -
Trre14g04604 193 MobiDBLite consensus disorder prediction 140 161 - -
Trre14g04604 193 SUPERFAMILY RING/U-box 89 138 - -
Trre14g04604 193 CDD RING-H2_EL5-like 89 132 - -
Trre14g04604 193 FunFam E3 ubiquitin-protein ligase ATL6 53 138 - -
Trre14g04604 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 141 IPR013083 -
Trre14g04604 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04604 Trre-Chr14 53837847 53838428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04604 11 177 Rapid Response to Elicitors AT3G16720 34.300 4.11e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04604 - - cam:101489059 226.098