Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04600 ATGATGAAGAGCTCTTATCGGCTTGAGGCTTCTTTTCAAGCTGAGCTGAGTAGAAATTTAATAAGAGAAGAAAGTCGCGTAGAAAGGATTTTGATTCGAGGCTTGCTAAGTGAAGTCAACAAACAAAGAAAAAAAGCTTTCTCCGAGAAAGCGTCTGTTCACGTCAGGGTCCGCTGGAGATGTAGTCACTTTGACTTTTATCGAGATTGGGTTGGTATTAAGTATACTCATGATCTTTCTTTTTTTTCGCAGCAACAAGCTCCATCCACCATGGGTATCGATTTGAAGGCAGGAGGTAAGTCCAAGAAGACCAAACGAACAGCACCCAAATCCAATGATATCTACCTCAAGCTTCTCGTTAAGCTTTACCGTTTCCTTGTTCGGAGAACTGATAGTGGTTTCAATAAGGTCATCCTCAAGCGTCTTTTCATGAGCAAAGTTAACAAGCCACCACTATCTCTCTCTAGGTTGATTCGTTTCATGAAGGGAAAGGAGGGTAAGATAGGTGTAGTTGTTGGCGCCGTTACAGATGACATTAGGGTTTATGAAGTACCTGCAATTAAGGTAACTGCTCTAAGGTTCACAGAAACTGCCAGAGCTAGAATTGAGAAGGCTGGTGGGGAGTGTCTCACCTTTGATCAGCTGGCTCTTAGAGCTCCTTTAGGCCAGAATACGGTTCTTCTTAGAGGTCCCAAAAATGCTCGTGAGGCTGTTAAGCACTTCGGAAGAGCTCCTGGTGTGCCCCACAGCCACACCAAGCCCTATGTCCGTGGAAAGGGACGCAAGTTTGAAAAGGCCAGAGGAAAGAGGAAGAGCAGAGGCTTTAGAGTCTGA 834 0.4484 MMKSSYRLEASFQAELSRNLIREESRVERILIRGLLSEVNKQRKKAFSEKASVHVRVRWRCSHFDFYRDWVGIKYTHDLSFFSQQQAPSTMGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTDSGFNKVILKRLFMSKVNKPPLSLSRLIRFMKGKEGKIGVVVGAVTDDIRVYEVPAIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRGKGRKFEKARGKRKSRGFRV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04600 277 MobiDBLite consensus disorder prediction 243 277 - -
Trre14g04600 277 SUPERFAMILY Ribosomal proteins L15p and L18e 110 229 IPR036227 -
Trre14g04600 277 PANTHER 60S RIBOSOMAL PROTEIN L18 91 277 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre14g04600 277 MobiDBLite consensus disorder prediction 254 277 - -
Trre14g04600 277 FunFam 60S ribosomal protein L18 91 277 - -
Trre14g04600 277 Pfam Ribosomal protein 60S L18 and 50S L18e 92 277 IPR021131 -
Trre14g04600 277 Gene3D - 91 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04600 Trre-Chr14 53814747 53817707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04600 93 277 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 77.419 1.43e-101 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04600 K02883 - gmx:100499789 337.806