Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04584 ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGGAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTATTTATGAAGTATGGACACATAACTCACATTGACCTTAAGGTTCCACCAAGGCCCCCTGGCTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCCGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTGGCAATTCCTCTTCAAGAGATCGACATAGTAGTCATAGCAATGGTCGGGGTGGACGTGGAGTATCCAGACGTTCTGAATATCGTGTTCTAGTCAATGGATTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCACAAGTTTTTCATGATGGAAGGGGTACCACTGGGATTGTAGATTACACAAACTACGATGATATGAAATATGCTATCAAAAAGCTTGACGACTCTGAGTTCCGAAATGCATTTTCCAAGTCTTATGTTCGAGTGAGGGAATATGATTCAAGGCGGGACTCTAGAAGTCCGAGTCGTGGCCGTTCTCATTCTAGAGGAAGAAGCTACAGCCGCAGCCGTAGTCGCAGCCGTAGCCGCAGTCCAGTACATAGCACAAGCAAATCTCCTAAGGGTAAATCCTCACAACGTTCCCCAGCTAAATCGCCAGCAAGATCAGTTTCTCGTTCTCGTTCTCGCTCAAGATCTAGATCCCGTTCTTTATCAGGATCACGTTCAAGGTCTAGGTCTCCATTACCTCTGCGTAATAAAAGCCCCAAAAAGCCCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCAGAGCAAGAGTTTGTCCAGGTCACCAATTTGA 915 0.4732 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGGNSSSRDRHSSHSNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGRSHSRGRSYSRSRSRSRSRSPVHSTSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSRSLSGSRSRSRSPLPLRNKSPKKPSASRSPSRSRSQSKSLSRSPI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04584 304 Gene3D - 114 191 IPR012677 -
Trre14g04584 304 CDD RRM1_SF2_plant_like 8 78 - -
Trre14g04584 304 MobiDBLite consensus disorder prediction 281 304 - -
Trre14g04584 304 FunFam serine/arginine-rich splicing factor SR34A-like 114 191 - -
Trre14g04584 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 178 IPR000504 GO:0003723
Trre14g04584 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Trre14g04584 304 MobiDBLite consensus disorder prediction 79 113 - -
Trre14g04584 304 Gene3D - 2 113 IPR012677 -
Trre14g04584 304 SMART rrm1_1 115 186 IPR000504 GO:0003723
Trre14g04584 304 SMART rrm1_1 8 78 IPR000504 GO:0003723
Trre14g04584 304 MobiDBLite consensus disorder prediction 249 263 - -
Trre14g04584 304 MobiDBLite consensus disorder prediction 223 248 - -
Trre14g04584 304 MobiDBLite consensus disorder prediction 187 202 - -
Trre14g04584 304 SUPERFAMILY RNA-binding domain, RBD 5 179 IPR035979 GO:0003676
Trre14g04584 304 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 5 270 - -
Trre14g04584 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Trre14g04584 304 MobiDBLite consensus disorder prediction 203 222 - -
Trre14g04584 304 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 1 113 - -
Trre14g04584 304 MobiDBLite consensus disorder prediction 187 304 - -
Trre14g04584 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Trre14g04584 304 MobiDBLite consensus disorder prediction 96 110 - -
Trre14g04584 304 CDD RRM2_SF2_plant_like 114 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04584 Trre-Chr14 53715283 53719228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04584 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04584 K12890 - gmx:100789847 315.079