Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04583 ATGAGTCCTAGCTCACAATCAAGTTGTGTTACAAGCTCACAACAAACATCACATATTGATTCTGTTTCCATTGATACAATGAAAAGTGTAACAAGACATAGATGGACTGGTAGATATGAAGCTCATCTATGGGATAACAGTTGTAAGAAAGAAGGACAAGCTAGGAAAGGAAAGCAAGTTTATCTAGGAGGTTATGACATGGAATAA 207 0.3623 MSPSSQSSCVTSSQQTSHIDSVSIDTMKSVTRHRWTGRYEAHLWDNSCKKEGQARKGKQVYLGGYDME 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04583 68 Gene3D AP2/ERF domain 27 68 IPR036955 GO:0003700|GO:0006355
Trre14g04583 68 Pfam AP2 domain 28 68 IPR001471 GO:0003700|GO:0006355
Trre14g04583 68 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g04583 68 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 26 68 - -
Trre14g04583 68 ProSiteProfiles AP2/ERF domain profile. 26 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04583 Trre-Chr14 53697243 53698172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04583 28 68 AP2-EREBP Transcription Factor Family AT5G65510 85.366 8.58e-23 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre14g04583 AP2 1.7e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04583 K09285 - pvy:116133647 97.0561