Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04560 ATGAAGAGAAAAACCCCTGGAACTACAAAGGGAAGAAAGAAGGTTCCATTAGGTTCGAGTAACACGAAACAGTTACAGCTTCAGCTCAGTAAATTCTCTCTCACACAATACAAACCATTACCAACAACTTGTACTTCTTCCACCATTTCTCGCTTCCAGAACCTTCTAGATTCAGATGCCATTGAAAACCCTTCCTCTTGTGTTAGGGTTACGAATGATGCCACCGAAGCAGATAACAGAGATTGCATTCTCAGCCAAGATTTCTTCTGTACCCCAGATTATATAACACCGGATAATCAGAGAATATTGAATGGTTTGGATTTCAATAAGGATAATAGCCCTTGCCCTAAATCGCCGGAGAAATTGAATACTACGAAAAGCAAGAGATGTCGATTGGACGGTGTATCGGTAAACACTCTTAGCCCTACGTATTCTAGCGACCATCAACAAGTTGTGGAACTTGGTAAGGACTCTGTTGCCGAGGAAGAAGATGTTGATAAAATGATTGCTTCTGGTAAGCCGAAGGCCCAGAATTATGTATCACATTCTGCAGCTGCATTGCGATGCCGGGCTATGCCTCCTCCTTGCATCAGTAACCCCTATTTAAAAGACGTTTCACAAAAGGAAACAGATCCCTTTGCAAACCAAAGATCCAAATGTGCAGGTCTCTTCCCTAAATTTACAGCCGTTGACAGGCTCTCACGTTATCGCACAGACTTTCATGAGATTGAGCAAATTGGTAGAGGGAACTTTAGTTGTGTTTTCAAAGTATTAAAGCGAATAGATGGCTGCTTGTATGCTGTGAAACGCAGCACAAGACAATTACAGCTGGAAACAGAAAGGAGAAAAGCTTTGATGGAAGTCCAAGCTTTGGCAGCGTTGGGTTCCCACGAGAACATTGTGGGTTATTACACTTCATGGCTTGAAAATGAACAGCTGTACATTCAAATGGAGATATGTAATCATAGCTTATCCGTAAAGAAAGGCTCTGAGTTTTTAGCTGAAGGTCAAGTGTTAGAAGCTTTATATCAGGTTGCCAATGCACTGCGATTTATGCATGGGAAAGGAATAGCTCATCTTGATGTTAAGCCTGATAATATTTATGTCAAAAATGGTGTGTATAAGCTTGGTGATTTTGGATGTGCAACTCTTATTGATAGTAGCTTGCCAATCGAGGAAGGAGATGCCCGTTATATGCCCCAGGAAATCCTTAATGAGAATTACGATCACCTTGATAAGGTTGATATTTTCTCCTTGGGAGTTTCTATTTATGAACTCGTTCGAAAATCGCCTTTGCCAGAATCAGGAGGTCATTGTTTGAATCTTAAAGAGGGCAAGTTACCACTCCTACCCGGTCATTCATTGCAATTCCAAAACTTGCTCAAGGCCATGATCGACCCTGATCCAGTCAAGAGGCCTTCTGCCAGAGAGTTGGTAGAGAACCCAATTTTCGAGAGGGTCTTAAGAACAGCGAAAAATTGA 1482 0.4177 MKRKTPGTTKGRKKVPLGSSNTKQLQLQLSKFSLTQYKPLPTTCTSSTISRFQNLLDSDAIENPSSCVRVTNDATEADNRDCILSQDFFCTPDYITPDNQRILNGLDFNKDNSPCPKSPEKLNTTKSKRCRLDGVSVNTLSPTYSSDHQQVVELGKDSVAEEEDVDKMIASGKPKAQNYVSHSAAALRCRAMPPPCISNPYLKDVSQKETDPFANQRSKCAGLFPKFTAVDRLSRYRTDFHEIEQIGRGNFSCVFKVLKRIDGCLYAVKRSTRQLQLETERRKALMEVQALAALGSHENIVGYYTSWLENEQLYIQMEICNHSLSVKKGSEFLAEGQVLEALYQVANALRFMHGKGIAHLDVKPDNIYVKNGVYKLGDFGCATLIDSSLPIEEGDARYMPQEILNENYDHLDKVDIFSLGVSIYELVRKSPLPESGGHCLNLKEGKLPLLPGHSLQFQNLLKAMIDPDPVKRPSARELVENPIFERVLRTAKN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04560 493 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g04560 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 357 369 IPR008271 GO:0004672|GO:0006468
Trre14g04560 493 Gene3D Phosphorylase Kinase; domain 1 228 319 - -
Trre14g04560 493 Pfam Protein kinase domain 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04560 493 Gene3D Transferase(Phosphotransferase) domain 1 320 489 - -
Trre14g04560 493 FunFam WEE protein kinase 230 318 - -
Trre14g04560 493 SMART serkin_6 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04560 493 ProSiteProfiles Protein kinase domain profile. 240 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04560 493 ProSitePatterns Protein kinases ATP-binding region signature. 246 269 IPR017441 GO:0005524
Trre14g04560 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 39 485 - -
Trre14g04560 493 FunFam Wee1-like protein kinase 319 488 - -
Trre14g04560 493 SUPERFAMILY Protein kinase-like (PK-like) 230 486 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04560 Trre-Chr14 53579942 53583411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04560 2 487 Core Cell Cycle Gene Families AT1G02970 59.476 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WEE Trre14g04560 Pkinase 2.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04560 K06632 - gmx:547742 716.842