Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04555 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTTTCCTCAGGAAACAATGGAGAAGATGTTTATGATGAAAGCAAGCAGCAACAAGTTCAAAATAATCTCAATGACACAGATTCAGGACCTTCTGGTGCTTCTAATAGCAATAGCTCAACTAATCAACAACAAATCAAGAAGAAAAGAAACCTTCCTGGAACACCAGATCCTAGTGCTGAAGTTGTTGCATTATCACCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGATCAAAATCTTCAGTTACATCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACGAGCGCAGAGGTGAAGAAAAAGGTGTATGTGTGTCCTGAGCCATCATGTGTCCATCATAACCCAGCTCGTGCATTAGGCGACCTTACTGGTATCAAAAAACATTTTAGTCGCAAACATGGCGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAGGCACACCAGAAAACTTGCGGTACAAGGGAATACAAATGCGATTGTGGAACCATATTTTCTAGGAGAGATAGTTTTATAACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAAGGATTAACTAGTGGCATGCCACCAAATTTACAAAATCAAATGCATGAACCTATCTCTACTATGCCTCTAAAACAAAATTCCAACACTCCATCAGAATTAAACAATGAATATGACCCTAAAAACTCACTAAAATCACCAACTCAAGAACATGTTCCAACACCATTTAGATCAACAAATGCATGTGGTGGCATGTTTTCTACTAGTGCAGGTGCACTTTTTGGTGGCCCAAAAAACTTACCTCCCTCTTCTTCATCCCTTCAACTAAGTTCCAATAGTTTCAATTACTTCAACGACAACAAAACCGGAGGACTAATTTGTGGCTCGGCTCAAATGTCGGCAACCGCTTTATTACAAAAAGCGGCACAAATAGGCTCAACTTCAAGCAATAGTGGTAATAATTCATCTATGATGCAAAAAAGCTTTGTTAGTAGTATGGTTAGTCCTAATCATGTTTCTAATCCCATCATGATGCATCATAATCAAAATCAACAATCTTATGAACACTTTAATCCACTAAACCATAATGATTTATCTAACATGGCTGGTGTTAGTGGTGGTGGAGTATTCACAAATCAACTATTTCAAAACAATACTAATAATGATATTGGAATGTTTAGTCAAATATCAATGGGAAATGATCATAGTAATGGATTGATGAAGAATATGGCAGAGAGTAACCAATTAGTTCATGATTTCTTGGGAATTGGTGGTTCAAATTCAAGTTTGCATGAACCACAACAACAAAGATTGGAAGCATTAACTCATCGGAGGTTGGAAATTATGAATGATTTTCATCATCATCTTCCACATGATGATTCTGTTATGGAGAAATCAATTTGGGATGTTTGA 1512 0.3704 MSNISGDEGSFSSGNNGEDVYDESKQQQVQNNLNDTDSGPSGASNSNSSTNQQQIKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQMHEPISTMPLKQNSNTPSELNNEYDPKNSLKSPTQEHVPTPFRSTNACGGMFSTSAGALFGGPKNLPPSSSSLQLSSNSFNYFNDNKTGGLICGSAQMSATALLQKAAQIGSTSSNSGNNSSMMQKSFVSSMVSPNHVSNPIMMHHNQNQQSYEHFNPLNHNDLSNMAGVSGGGVFTNQLFQNNTNNDIGMFSQISMGNDHSNGLMKNMAESNQLVHDFLGIGGSNSSLHEPQQQRLEALTHRRLEIMNDFHHHLPHDDSVMEKSIWDV 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04555 503 MobiDBLite consensus disorder prediction 1 69 - -
Trre14g04555 503 MobiDBLite consensus disorder prediction 1 59 - -
Trre14g04555 503 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Trre14g04555 503 Gene3D Classic Zinc Finger 139 219 - -
Trre14g04555 503 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Trre14g04555 503 Gene3D Classic Zinc Finger 63 131 - -
Trre14g04555 503 MobiDBLite consensus disorder prediction 241 280 - -
Trre14g04555 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Trre14g04555 503 SMART c2h2final6 85 107 IPR013087 -
Trre14g04555 503 SMART c2h2final6 161 181 IPR013087 -
Trre14g04555 503 SMART c2h2final6 126 156 IPR013087 -
Trre14g04555 503 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Trre14g04555 503 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Trre14g04555 503 FunFam protein indeterminate-domain 12-like 64 132 - -
Trre14g04555 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 465 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04555 Trre-Chr14 53537133 53539357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04555 32 349 IDZ Gene Family AT3G50700 54.783 1.26e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04555 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04555 - - gmx:100782774 649.818