Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04554 ATGGAGCTCTGGAACGACGGTTTATCGGAGCTGGAGATTGGGACTTCCGTCGAGTCATTCCAGAAGTTTTTAGGTTCTCAAAGAGAACTCTTACATAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACACAATGCAAACTCACCGGTGTCAATCCTCTCTCTCAAGAAATGGCTGCTGGTGCTTTGTCAATAAAAATCGGAAAAAGACCCAGGGATTTATTAAATCCAAAGGCTGTAAACTACATGCAATCAGTTTTTTCTATTAAAGATGCAATTAGCAAGAAAGAATCTCGCGAGATCAGTGCTTTATTTGGTGTAACAGTAACACAGGTGCGTGACTATTTCACTAGTCAGCGTTCAAGGGTGAGGAAACAAGTTCAGTTGTCAAAGGAGAGGGCATTAAAATCTAATTCTTGTGCAGAATCTCTTGATGCGCAAATAAACTCGGATCCCGTGACATCAATGAATCCAGCTCCCTCAAACTCTGTTGGTGCCACCAACGTGGAACAAGCATCCTATTCCGCTCAGGAAGCAGCTCTTTCTGACCTAGATGACTCGGATAAACAATTTGTTGAGAACATTTTTGGTCTAATGCAGAAAGAGGAAACATTTTGTGGACAGGAGAAATTGTTGGAGTGGATATTGACAATACATAATTTTTCAATCTTGTTGTGGTTTTTGACCGGAGGAGGTGCAATGACTTTAGCAAATTGGTTGAGTAGAGCCGCCGTTGAAGAGCAAACAAGCGTGCTGCTTCTTGTCTTGAAGGTTCTTTGTCATTTACCTTTACATAAAGCCCTTCCTGCCCATATATCAGCTTTATTGCAGAGTGTTAATAGACTGCGGTTCTACAGGACATCAGACATATCTAACAGGGCAAGGGTTTTGTTATCAAAGTGGAGCAAATTGTTAACAAGGAACCAAGCCATAAAGAAACCCAATGGTGTTAAGCTTTCCGGTGATGGTCGGAAAGAGACAATACTTTCTCAGAGCATTGGTCAAACCATCGGCCCTGAATCATGGCATTTTGATGTTCCTGAAGACATTCTTGCTCTCTCGAATGAATTTTCAGATGATTTCAGGAAACCGGAATCTCATTCTGTGAAATTGTTACTACCCAGCTCAGATGATTGTAATAAGAAACACCCCCTTGGTGTATCTTCATCTCAATCCAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGATCGGTGAGTAGAAGTCCACAGGCGGCAAGGACAGGGCCGGTAAGTCAGGGCCGTCCTATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCATTATTTATGCAGAGTAAGTACGGGAAAACTGCTTCAAAAGAAAATAAAGCCAAAATCAATAGTCCAAGTAAATCTCAGACAAAGCAGGCAAGTATTGCAGTTTGCTCTTCTAAAGTTCCAGTGCCACTAAGAAATGAAGAAGACAAGAAACCTCTGCTGCTTCCCTCTAAAACTACTAATAGGCCAGATGCTTCTTATTCTAAACTGAAAATGGATTTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTGAAAATACCCTGGAAAACACCAGCAGAAGTGGAAATTAAAGATACCTGGAGAGTTGGTGCTGGTGAAAATAGCAAAGAGGTTCATGTTCAGGAAAACAGAAACCACAGGGACAAAGAATCCATTTATAGGACAGTACAAGAGATGCCCCCTAACCCCAAGGAGCCTTGGGATGTCGAAATGGACTATGATGACTCTTTGACACTGGAAATTCCTATTGAACAGCTACCGGATGGTGATGGCCCAGAAATAGAAGATGCATCCAATCAAGTTGAAACTCATGCTGCTGCTGTTCAAGGTGTGGCCTCCTCATCTTCAGCCAGTAATGCAGCCACTGCTGAACCTGATTTAGAGTTGCTTGCCGTACTGCTAAAAAATCCAGACTTGGTGTTTGCCCTTACTTCTGGACAAGTTAGCAACGCATCAAATGAGGAAACCTTGAAGGTGCTTGACATGATCAAGAGAGGCAGTGTGAACTTGGGATTAAGTGTAAATGCAAATGGCAACCCTGGTACTAGTGCAAAGGCCCACGAGAAGGTGGAAGTTTCTCTCCCATCTCCTACTCCTTCAAGAGATCCAAGCACGAGTGGATGCAGCATAGAAGCACCAAAGAATCCATTTACGCAGCAAAACTTAGCACATGATAGAAGAATTTTCCAGAGCTCTGCTTCAATTGCAACTACCAATTTATCATCTCAGATTCCAGCAACTAGCACTACAGTAAGGCAACATCATACATTTGTTCCATTTTCGAAGCAGCTCAACGGCACAACGGCATCTCTATATTCACTACCTCAGGCAACTAATATTATTCCTGAAAAACAACCAGTTCACTCCCATTCTTCCGTGTATGTACAAACACCATTCTCTGATAGAGGTTTAGCCATGAAGAACACAATCACTGCAGATGTATCTACAGTTGGCGCACATTCAGCACATCTAGCAATGCGGGCTGATGGCATAAGTAACATAAAACCAGTAGTACCTAATTCTAGTATGCAACAAGAGGGTTTGTCTAATTCATTCCCACAATCCTTCACGTTGACCTCACCAACAACATCACGCTCTGTCGCGCAACTACAGAGACATGCGCATATGATGCCCAACCAGCCCCATTTCGTCGAACCTTCTTATCATAACCCTGTTCATCCCTATCAACCACAATTCGAAAAATCAGGTCCCGTGTCAGATCTGCGGAGAGTTAGACAGGATATACCACCGAGTTATCATTCTCAGCAAAATCATAACAACTATAACACATTGGTTGGGGGATCCATGCAATCTGGTTCTTGGGATAGAAACAATTATGAAAGGGAGGGATTGGAATCGTGGAGTCCGCACGATAGTCCAACTAGGAATCCTAGGTATGCTCCAGGGAGGAATCCCCCGGAGTCCAGAATGAATAATGTAAGAAGTCATAGACCTGAATGGTCAAGACAGCGGGGATCTTCTGGACACTGGGACCGTGGTAGGCATGAAAATAGAAAATGGCATGATCAGAGGCGGTGA 3069 0.4343 MELWNDGLSELEIGTSVESFQKFLGSQRELLHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDYFTSQRSRVRKQVQLSKERALKSNSCAESLDAQINSDPVTSMNPAPSNSVGATNVEQASYSAQEAALSDLDDSDKQFVENIFGLMQKEETFCGQEKLLEWILTIHNFSILLWFLTGGGAMTLANWLSRAAVEEQTSVLLLVLKVLCHLPLHKALPAHISALLQSVNRLRFYRTSDISNRARVLLSKWSKLLTRNQAIKKPNGVKLSGDGRKETILSQSIGQTIGPESWHFDVPEDILALSNEFSDDFRKPESHSVKLLLPSSDDCNKKHPLGVSSSQSRERRKVQLVEQPGSVSRSPQAARTGPVSQGRPMSADDIQKAKMRALFMQSKYGKTASKENKAKINSPSKSQTKQASIAVCSSKVPVPLRNEEDKKPLLLPSKTTNRPDASYSKLKMDLKEPLWEKCKRVKIPWKTPAEVEIKDTWRVGAGENSKEVHVQENRNHRDKESIYRTVQEMPPNPKEPWDVEMDYDDSLTLEIPIEQLPDGDGPEIEDASNQVETHAAAVQGVASSSSASNAATAEPDLELLAVLLKNPDLVFALTSGQVSNASNEETLKVLDMIKRGSVNLGLSVNANGNPGTSAKAHEKVEVSLPSPTPSRDPSTSGCSIEAPKNPFTQQNLAHDRRIFQSSASIATTNLSSQIPATSTTVRQHHTFVPFSKQLNGTTASLYSLPQATNIIPEKQPVHSHSSVYVQTPFSDRGLAMKNTITADVSTVGAHSAHLAMRADGISNIKPVVPNSSMQQEGLSNSFPQSFTLTSPTTSRSVAQLQRHAHMMPNQPHFVEPSYHNPVHPYQPQFEKSGPVSDLRRVRQDIPPSYHSQQNHNNYNTLVGGSMQSGSWDRNNYEREGLESWSPHDSPTRNPRYAPGRNPPESRMNNVRSHRPEWSRQRGSSGHWDRGRHENRKWHDQRR 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04554 1022 MobiDBLite consensus disorder prediction 689 725 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 443 469 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 403 419 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 445 469 - -
Trre14g04554 1022 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 106 1009 - -
Trre14g04554 1022 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Trre14g04554 1022 MobiDBLite consensus disorder prediction 987 1022 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 926 1022 - -
Trre14g04554 1022 SMART HOX_1 68 130 IPR001356 GO:0003677
Trre14g04554 1022 Gene3D - 68 136 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 926 954 - -
Trre14g04554 1022 SUPERFAMILY Homeodomain-like 69 130 IPR009057 -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 707 725 - -
Trre14g04554 1022 MobiDBLite consensus disorder prediction 380 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04554 Trre-Chr14 53522470 53531907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04554 10 731 Homeobox Transcription Factor Family AT4G02560 48.872 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04554 - - gmx:100806633 1371.68