Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04518 ATGTCAAGGCCAGTCAAGCTGTTAACTGAGATCCATAGTCGTAAAGAACTTTGGAAGATTGCTGTCAAGGTGAAAGACAAATGGAATGTATACAAGGATGGTAAACAGAGCTTCGAAGTTTTGGTTGTTGACGCCGAGGGAAATGACATTTTAGTCATAGTACCACCTGATTTAAATGCCAACTTTGATAAACAAATTGTTGAGAACAACAGTTATTGCTTTGAAAACTTCCAAGTTATCAAGAATGAAGATCAATTTAAGGTTTCACAAAATCAGTATAAATTGAGGTTCAATGGATCAACTTTGCTTTATGATGTTAATGTACACCAAATTCCAGACGCAACTACAAAGTTTAAGGACTTTGTTGAGATTCTCAGTGGAAAATGGCGTGAAGATGTACTATATGATGTCATCGGAGTCTTAGATGAAATTGGATATTCACAAACTATGAAAGGAAGCCGCAAAATTCAGGTCAATTTCAAACTCAGAGATCTTAGTGACAATAAGATCAGCTGTACTTTATGGGAAGACTATGCTATGAAGTTCATAACATATACTAGAGAAAAGTGTGATGCTGGACCTACTATCATTGTCATGAAGTATGCAAAGATCAAGCCAGAAGGCCAGTATCCGCTGACAGTTTCAAACACTTGGTCCACTACAAAACTTTTTATCAATGATGACATCAAAGAAATAGTTGAGTTCAAAAAAAGCTTAGAATTGGCTATTTCAGAGGGAACATTTGAGCCAATTGTTGATACACCGTCACAACTCATGTCGCAATATTCTGGAGGGTCGCAGTATACCCCGGAACAAAAATTCCTGCACAAATGTGAATTAATGCCACTTTCTAAAGTTGTCAATCTGACGATGGATAGTCAAGTTGTAACTGTTGTTGACACGGTTTGCGTCAAGACAAGCAAAAATGGTTGGTATTTTCAAGCTTGCTTTCATTGCCCCAAAGCAGCTGGTGGAGATAAGCCACCTTATAAGTGTGAAGGTGGTCATGAGACTGAAACCCAAATATGGAAGTACAGATTGGATATTGAGGTTGTCTATAACAACACTGAAAGTGTTTTCACATTTTGGGACCGCGAATGCACACAAATGTTGGGAATATCCGCATCTGATCTTCGTGACAAAATGATTGCAATCGGTATATCTGATCCACGCAATTATCCTGTTGATATCGACAAAATGGAGGGTCGAACATTAGCAGCTAGGATTAAGTGGCAGTTTAAATGGAAAAATGCATCTGTCAATCAAATTCATGAGGGAAAAGAGTTTATTGCTGATCTCAAATCACGTTTTTCATCTACTCAGGATTCAAAAAATGATGCTTCCAACAATGACAAAGCAACTGCTGAACCTACTCTTCAGGAGATAACCACTTCGCAGTCTGTGGAAAACACGGAAGATGTTGTTATACCTACGGTTTCTTTATCTGATGAGATTGACCCTGATCAACTTTCAATGATCACACCTTCTAAACGAACTGCGACTTCTATCAAACAAGAGATCATGGTTGAAGAAACTCAAGATCTGATTGGAAGTAAGATGTCTTCAACAAAAGCAGTGTTGAACAAGAAGTCGCAGAATAAAATTGCAAAAAAATAG 1617 0.3785 MSRPVKLLTEIHSRKELWKIAVKVKDKWNVYKDGKQSFEVLVVDAEGNDILVIVPPDLNANFDKQIVENNSYCFENFQVIKNEDQFKVSQNQYKLRFNGSTLLYDVNVHQIPDATTKFKDFVEILSGKWREDVLYDVIGVLDEIGYSQTMKGSRKIQVNFKLRDLSDNKISCTLWEDYAMKFITYTREKCDAGPTIIVMKYAKIKPEGQYPLTVSNTWSTTKLFINDDIKEIVEFKKSLELAISEGTFEPIVDTPSQLMSQYSGGSQYTPEQKFLHKCELMPLSKVVNLTMDSQVVTVVDTVCVKTSKNGWYFQACFHCPKAAGGDKPPYKCEGGHETETQIWKYRLDIEVVYNNTESVFTFWDRECTQMLGISASDLRDKMIAIGISDPRNYPVDIDKMEGRTLAARIKWQFKWKNASVNQIHEGKEFIADLKSRFSSTQDSKNDASNNDKATAEPTLQEITTSQSVENTEDVVIPTVSLSDEIDPDQLSMITPSKRTATSIKQEIMVEETQDLIGSKMSSTKAVLNKKSQNKIAKK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04518 538 CDD RPA1_DBD_A_like 19 101 - -
Trre14g04518 538 SUPERFAMILY Nucleic acid-binding proteins 8 104 IPR012340 -
Trre14g04518 538 SUPERFAMILY Nucleic acid-binding proteins 303 417 IPR012340 -
Trre14g04518 538 CDD RPA1_DBD_B_like 136 239 - -
Trre14g04518 538 MobiDBLite consensus disorder prediction 439 468 - -
Trre14g04518 538 Gene3D - 110 248 IPR012340 -
Trre14g04518 538 Gene3D - 260 435 IPR012340 -
Trre14g04518 538 Gene3D - 3 104 IPR012340 -
Trre14g04518 538 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Trre14g04518 538 SUPERFAMILY Nucleic acid-binding proteins 121 240 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04518 Trre-Chr14 53190061 53193303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04518 1 380 Core DNA Replication Machinery Family AT5G08020 23.367 8.74e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04518 - - tpra:123887332 543.502