Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04491 ATGTCGAAATTTTTCTCTCAGGGTGGTGGTACTTCTGATGATGAGAGTGATTTTGATGAATCAGTTGATGATGTACCGGTTGAACCTGACACTGATCCTACTTTAAGTAAGTACAGGGTTGATAATGCTAGTGACAGCGATGACGATGATGGTCACAGGCGTGTTGTTAGGTCGGCAAAAGATAAGCGATTTGAAGAGATGGCTTCAACGGTTGACCAGATGAAAAATGCAATGAAGATCAATGATTGGGTTAGTTTGCAAGAGAGTTTTGACAAGATCAACAAACAACTCGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAATCTTTATATTAAGGCTCTTGTCTTGTTAGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAAGCCTTGAACTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAAGAGCTGATTACTAAATGCAGGGAGAGTCCTGAGAGTGAGGAGGAAAAGGATGAGGATGAGGAGAGTGATGAAGAAGATGATAGTGATGGTGAGACTATTGAGCCCGAGCAGCTTCAGAATCGGGAACCGAAATCTGATTCAGAAGCTGAATACGAAGAGGGAAGGGATGATGCTGGTGATGGACCTTGGGACCAAAAGCTTAGCAGGAAAGATAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTTGCAGCTAGGGGAAGGAGGGGAACCGGGAGGTTTGAACAGGTTGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAGAAGCTTGAGATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGACGTTAATCCAGGTCTTAGTGGCCATATGCCCATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGACTATGATGGACCAATTAGGGTTTGGGGTAACTTAGTTGCCTTCCTAGAAAAAATAGATACCGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACACGTGAGTACGTCCAGAGACTCAGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGCAGCGGAGATTTCAAATCATCTTCTAAGGTGGCTTTGAGGAGGGTTGAACTCATATACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGATAATGAAGGTGAGGCTAGCGAGGAGTCCAAAGGGTTTGGGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTCCCGGAGAATAGCAGGGCCCTAATGGATGTATTAGTTTCACATATATACAAATATGGTGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACATGGCTGCCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATAACTGCTATGCTGCTGGAGGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCACAGGGTCATCAGTAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGATAGACAAACGTTGACTGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCACTAGGGTTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTAGCTCTCTCGATGTATGGAAATTTGTTAAAAATCGAGACACCGTATTGGAAATGCTGAAGGACAAAATCAAGGAAGAGGCACTTAGGACATATCTCCTTACTTTCTCTTCATCCTATGAGTCTCTGAGTCTGGATCAAGTCACTAAATTTTTCGACCTATCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAACGAGGAGCTTCATGCTAGTTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGGCTGCAAGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACAGGACTATGCTGCTGGTGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCTATTCTCAGCCACGGCAAGGGAGTGGACGTGCAGGATATGGTAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCTGCTAGGAGTGGCTATTCAAGGGATCGAGTGGGGCGTGCTGGTTATCAGAGTTCAGGTAGGAGTAATCAAGGGGGTTCAGGATTGAGGGGACCCCAGGGAGATGTATCTACTCGTATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2784 0.4397 MSKFFSQGGGTSDDESDFDESVDDVPVEPDTDPTLSKYRVDNASDSDDDDGHRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPNLYIKALVLLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKDEDEESDEEDDSDGETIEPEQLQNREPKSDSEAEYEEGRDDAGDGPWDQKLSRKDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIRVWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLESSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNEGEASEESKGFGDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLITAMLLEVPNMAANVHDAKHRVISKNFRRLLEVSDRQTLTGPPESVRDHIMAATRVLIKGDFNKAFEVISSLDVWKFVKNRDTVLEMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDGQDYAAGGGGGTGPSGGRWQDLSYSQPRQGSGRAGYGNAGGRPLAYGQAARSGYSRDRVGRAGYQSSGRSNQGGSGLRGPQGDVSTRMVSLKGVRA 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04491 927 MobiDBLite consensus disorder prediction 13 27 - -
Trre14g04491 927 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 866 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre14g04491 927 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Trre14g04491 927 MobiDBLite consensus disorder prediction 1 61 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 133 152 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 849 863 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 153 172 - -
Trre14g04491 927 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 IPR000717 -
Trre14g04491 927 MobiDBLite consensus disorder prediction 194 228 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 895 910 - -
Trre14g04491 927 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 38 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trre14g04491 927 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Trre14g04491 927 MobiDBLite consensus disorder prediction 818 927 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 131 228 - -
Trre14g04491 927 Pfam PCI domain 658 786 IPR000717 -
Trre14g04491 927 Coils Coil 142 169 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 41 61 - -
Trre14g04491 927 MobiDBLite consensus disorder prediction 173 193 - -
Trre14g04491 927 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 922 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04491 Trre-Chr14 52999681 53003699 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04491 2 927 Eukaryotic Initiation Factors Gene Family AT3G56150 67.694 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04491 K03252 - gmx:100781967 1426.38