Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04488 ATGGCTGCCACCAATGCAGGCACAGCGCCGCCGCGTACACTTTCTGAGAAAGAAGCCGGTATCCAAATGATGTTGGCTGCCGATGTTCATCTCGGTACCAAGAACTGCGATTTCCAAATGGAACGCTACATCTTCAAACGCCGCAATGACGGTATTTATATTATCAATCTTGGAAAGACATGGGATAAGCTTGTTCTTGCTGCTAGGGTTATTGTTGCAATTGAAAACCCTCAGGATATCATTGTTCAATCTGCTAGACCTTATGGACAAAGAGCTGTTCTCAAATTTGCTCAGTATACTGGTGCTCATGCTATTGCTGGAAGACATACTCCTGGTACTTTCACCAATCAGCTTCAAACCTCATTCAATGAGCCTCGTCTTCTTATCCTTACCGATCCAAGAACCGATCACCAGCCAATTAAGGAAGCTGCACTTGGAAACATTCCAACAATTGCTTTCTGTGACACTGATTCTCCTATGAGATATGTTGACATTGGTATCCCTGCCAACAACAAAGGAAAGCACAGCATAGGTTGTCTGTTTTGGCTTTTAGCTAGGATGGTGTTGCAGATGCGTGGCATTATTCGTCCTGGCCATAAGTGGGATGTCATGGTGGATCTATTCTTCTACAGAGAACCTGAGGAGGCCAAGGAGCAAGAGGAGGATGAAGTTCCTGTTCCAGATTATGCCATTGCTGACTTCAATGCAGCTTCTATCCCCAATGATGGACAGTGGCCTGCTGCAATCGATCAGCCATGGGCTGATGCCGTTCCACAACCTATTGCAGCAGCTCCTGGTAACTGGACAGCCCCAGAAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTTCCACCTCCTCAACAAATACCTATACCTGTTCCTGGAGTTGAATCTATCCAAGCAACTGGATGGGAATAA 918 0.4651 MAATNAGTAPPRTLSEKEAGIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWDKLVLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGIIRPGHKWDVMVDLFFYREPEEAKEQEEDEVPVPDYAIADFNAASIPNDGQWPAAIDQPWADAVPQPIAAAPGNWTAPEEAVAGDWGEAVPPPQQIPIPVPGVESIQATGWE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04488 305 PANTHER 40S RIBOSOMAL PROTEIN SA 11 304 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre14g04488 305 NCBIfam 30S ribosomal protein S2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre14g04488 305 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
Trre14g04488 305 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 Hamap 40S ribosomal protein SA [rps-0]. 8 282 IPR027498 GO:0003735|GO:0006412|GO:0015935
Trre14g04488 305 FunFam 40S ribosomal protein SA 20 226 - -
Trre14g04488 305 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 Gene3D - 20 224 - -
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre14g04488 305 MobiDBLite consensus disorder prediction 278 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04488 Trre-Chr14 52976833 52978284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04488 1 285 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 72.917 2.47e-147 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04488 K02998 - gmx:100805318 528.48