Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04456 ATGCGGAGTTTCAGAATGAGGAATTTGTTATCCCGTATCAAAACAGGAACAAAGAACAAATTCATCAGAAACAGAAACAGAAACGTTCTCAAACACAAAAACAACCAAAACCACATTTCTTCCATTACCAAAAATTTCCCATCTCCCATTGAAGATGAAGAAGAAGATACAGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTAGGAAATCTCTATTTCAACCCAGGATCCATCAACTCCAGAGACACTGGTTTAGGTAATCTTCATACTCTCACCGATGAACTTGTTCTTGACATTCTGGGTTTTTTGGATGGTACTAGTTTAGGTGTTTTAGCTTCTGTGAGCAAATCGTTTTATGTTTTCAGCAATCATGAACCCATTTGGAGGAATCTTGTGTTGGAGAATCTTATTGATGGGTTTCAGTATAATGGGTCATGGAAATCTACTTTTGTTTCTGCTTATTACCCTTCATTTGATATTTCGAGTAATGATCGTAGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATGTTGTTAGGAAGAGAGGTATTTCGGTTGAAGAATTTGTGACGAGTTTTGAGGAGGTTAATAAGCCGGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAAGAATTGGGATAGAGATTATTTGGTGAAGTTATGTGGTGATGATGTTAAGTTTTCGGTTGGGCCTGTGGAGATGAAGTTAAGGGATTATTTTCGATATTCGGATCAAGTTAGAGAAGAAAGGCCGTTGTATTTGTTTGATCCGAAGTTTGCTGAAAAAGTTCCGAAATTGGGTTTGGAATATAAAGTTCCGGTGTATTTTCGGGAGGACTTGTTTGATGTTTTGGGCAATGAGAGACCTGATTACAGATGGATTATTATGGGACCAGCTGGATCTGGATCGTCTTTTCACGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAAGGGTCGAAGAAATGGGTATTGTTTCCTCCTGATGTTATTCCGCCTGGTGTTCATCCTAGTCCTGACGGTGCAGAGGTGGCATCTCCTGTTTCGATAATTGAATGGTTCATGAACTTTTATGGCGCAACTAAGAATTGGCAAAAGAGACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTGCCCAATGGATGGTGGCATTTGGTGATCAACCTTGAGGAATCAATTGCCATAACACAAAATTATGTTAGCAGGTGA 1323 0.3923 MRSFRMRNLLSRIKTGTKNKFIRNRNRNVLKHKNNQNHISSITKNFPSPIEDEEEDTEEGFSIKSSAPSHTHGVQPLGNLYFNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFSNHEPIWRNLVLENLIDGFQYNGSWKSTFVSAYYPSFDISSNDRRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVTSFEEVNKPVLLEGCIDNWDALKNWDRDYLVKLCGDDVKFSVGPVEMKLRDYFRYSDQVREERPLYLFDPKFAEKVPKLGLEYKVPVYFREDLFDVLGNERPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWVLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWQKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04456 440 SUPERFAMILY Clavaminate synthase-like 210 440 - -
Trre14g04456 440 ProSiteProfiles JmjC domain profile. 294 440 IPR003347 -
Trre14g04456 440 Gene3D Cupin 186 439 - -
Trre14g04456 440 MobiDBLite consensus disorder prediction 37 72 - -
Trre14g04456 440 SMART cupin_9 285 438 IPR003347 -
Trre14g04456 440 Gene3D - 90 166 - -
Trre14g04456 440 FunFam F-box protein At1g78280 188 439 - -
Trre14g04456 440 SUPERFAMILY F-box domain 92 162 IPR036047 GO:0005515
Trre14g04456 440 Pfam Cupin-like domain 218 437 IPR041667 -
Trre14g04456 440 ProSiteProfiles F-box domain profile. 94 140 IPR001810 GO:0005515
Trre14g04456 440 SMART fbox_2 100 140 IPR001810 GO:0005515
Trre14g04456 440 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 94 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04456 Trre-Chr14 52771297 52772619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04456 85 440 Glycosyltransferase AT1G78280 38.420 8.14e-76 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre14g04456 Cupin_8 2.4e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04456 - - lja:Lj1g3v4753250.1 752.666