Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre14g04438 | ATGGAAAGCAAAACTGAAAATCTCGTGACATCGGCCGCTGCCTTTGTTGAAGGTGGCATTCAAGAATCTTGTGATGATGCTTGCAGCATATGCCTCGAAGAGTTTTGCGATAATGATCCTTCAACTGTTACAGTTTGTCGACACGAGTTTCACCTACAATGTGTTCTTGATTGGTGTCAAAGAAGCTCACAATGTCCTATGTGTTGGCAACCTCTTAGCTTTACCGATCCTACCGGTCAAGAATTATTTAAGGCTGTAGAGCAAGAAAGGAATTTTTGGGTCACTCCATCAAGAAATGTCAATACCTTTCATCAATCTACTCTTCGAGATTTTGGATTGCAACATCCACGCATAGGCGTCAATGATTATGATTTGGAAGAGAGAATACTTCAACATCTAGCTGTTGTTGCATCAAATGAAAGAATACATCAACTTGGTCAAAGGGAAGGTCAACGAATTCAGCAGACACCACAACTTCAAACTGAAAGTTCTTCAACTTATGGATCTACTATTATGGAAACAAATGGCCAAGAAACTTACTCTAGGGATAGAAGTGATGCGGCAAATTCTTGCCCTATAAATCAAAATAGAGCAAAACTATCAGAGTTACACTCTTTTTCAGATACTTTGCGATCTAGACTTAATGCAGTGTCGACGAGATATAAAGAGTCAATTTCAAAGGGTACAAGGTGTTGGAAGAATAAGTTGTTGTTTCCTCGAAGTTCTTCCATGGCAGAAGTTGGAACAAATGCAAGAAAAGAGATGAACCCGGGAATTTCTAGAGCATCTCAATCAATGAAATTGACGGGAGCTACGAAAAATAATAGAGTTCCTAATACTTCTTTGTCAAATAGTTTGAAGAAAGGTTCTATAGCAGAGGCAAGCAACCAAAATTATGTTGAAGTTAATGAAAAATATTCTTCATGTGACAACAATACTCCAAATGCTTCTTCATCCAGTTCACATTCAAATTGA | 975 | 0.3815 | MESKTENLVTSAAAFVEGGIQESCDDACSICLEEFCDNDPSTVTVCRHEFHLQCVLDWCQRSSQCPMCWQPLSFTDPTGQELFKAVEQERNFWVTPSRNVNTFHQSTLRDFGLQHPRIGVNDYDLEERILQHLAVVASNERIHQLGQREGQRIQQTPQLQTESSSTYGSTIMETNGQETYSRDRSDAANSCPINQNRAKLSELHSFSDTLRSRLNAVSTRYKESISKGTRCWKNKLLFPRSSSMAEVGTNARKEMNPGISRASQSMKLTGATKNNRVPNTSLSNSLKKGSIAEASNQNYVEVNEKYSSCDNNTPNASSSSSHSN | 324 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre14g04438 | 324 | MobiDBLite | consensus disorder prediction | 147 | 169 | - | - | |
| Trre14g04438 | 324 | FunFam | E3 ubiquitin-protein ligase RHF2A isoform X1 | 6 | 78 | - | - | |
| Trre14g04438 | 324 | SMART | ring_2 | 28 | 68 | IPR001841 | - | |
| Trre14g04438 | 324 | MobiDBLite | consensus disorder prediction | 303 | 324 | - | - | |
| Trre14g04438 | 324 | Pfam | Ring finger domain | 27 | 68 | IPR001841 | - | |
| Trre14g04438 | 324 | MobiDBLite | consensus disorder prediction | 148 | 169 | - | - | |
| Trre14g04438 | 324 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 14 | 77 | - | - | |
| Trre14g04438 | 324 | SUPERFAMILY | RING/U-box | 21 | 75 | - | - | |
| Trre14g04438 | 324 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 76 | IPR013083 | - | |
| Trre14g04438 | 324 | ProSiteProfiles | Zinc finger RING-type profile. | 28 | 68 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre14g04438 | Trre-Chr14 | 52658679 | 52660633 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre14g04438 | 25 | 74 | C3H Transcription Factor Family | AT5G15790 | 44.000 | 2.29e-11 | 61.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre14g04438 | K19043 | - | gmx:100800419 | 352.829 |