Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04430 ATGCCTTTAGGTTGCCCTCAATGTAAGGAAGGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAAAAGGTTGTTTCAATCCGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCGCCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACTACTGCCACCAACGCTTTGGTTGCTTAG 315 0.4254 MPLGCPQCKEGLAPEIPEDLYHLIKKVVSIRLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHRLARYYKKTKKLPPVWKYESTTATNALVA 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04430 104 PANTHER RIBOSOMAL PROTEIN S15P/S13E 10 31 IPR023029 -
Trre14g04430 104 Gene3D - 34 104 - -
Trre14g04430 104 SUPERFAMILY S15/NS1 RNA-binding domain 33 94 IPR009068 -
Trre14g04430 104 FunFam 40S ribosomal protein S13 35 104 - -
Trre14g04430 104 Gene3D - 14 33 - -
Trre14g04430 104 ProSitePatterns Ribosomal protein S15 signature. 50 80 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04430 104 CDD Ribosomal_S15p_S13e 34 95 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04430 104 SMART Ribosomal_S15_2 25 101 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04430 104 Pfam Ribosomal protein S15 35 95 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04430 Trre-Chr14 52577380 52580777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04430 5 104 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 65.517 1.53e-40 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04430 K02953 - mnt:21408265 131.339