Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04429 ATGGGATGCAAAGGTAGAGAAATGAGTTTTTCTACATACGATACCAATGATCTACCTATGATTGGTGATGACGACTATAGACTTGCACCTGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGTTGTTTCAATCCGTAACCATCTTGAGAGGAACATAAAGGACAAGGACTCAAAGTTCAGACTCATCCTTGTTGATAGCAGAATCCACCGCCTTGCTCGCTACTACAAGAAAACTAAGAAGCTTCCCCCTGTGTGGAAATATGAATCAACTACTGCCACCAACGCTTTGGTTGCTTAG 303 0.4158 MGCKGREMSFSTYDTNDLPMIGDDDYRLAPEIPEDLYHLIKKVVSIRNHLERNIKDKDSKFRLILVDSRIHRLARYYKKTKKLPPVWKYESTTATNALVA 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04429 100 Gene3D - 30 100 - -
Trre14g04429 100 FunFam 40S ribosomal protein S13 31 100 - -
Trre14g04429 100 PANTHER RIBOSOMAL PROTEIN S15P/S13E 28 96 IPR023029 -
Trre14g04429 100 ProSitePatterns Ribosomal protein S15 signature. 46 76 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04429 100 SUPERFAMILY S15/NS1 RNA-binding domain 26 90 IPR009068 -
Trre14g04429 100 SMART Ribosomal_S15_2 4 97 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04429 100 Pfam Ribosomal protein S15 31 91 IPR000589 GO:0003735|GO:0005840|GO:0006412
Trre14g04429 100 CDD Ribosomal_S15p_S13e 30 91 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04429 Trre-Chr14 52577380 52586596 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04429 28 100 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 89.041 5.93e-41 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04429 K02953 - zju:107414706 131.339