Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04423 ATGGCTATGCAAACTGTTTATCTGAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAATTATCATCTGGTGGTACTAATAATTCAGCAGCAGTACCATGGTGGAGTGGTTTTGGATCTCAATCAGTGTATGGAGAGTCTGGTGGCCAAATCAAATCATTTTCATTGGAGCCACCTTTTTCTGCTGTTGACCAACTTGCTGCAACTGCAAGTAAGCAATCTGTTTTGGGGAAAGGGCTAACTAATCACTTTACCATCTTTCCAGATGATTTTAAAATGTCAAGTGATGCACAAAAGCCTCATACAGCCATATCACTGCAGTCATCACTCCCTGATACCCCGCCTCGTTTCGAGCTAGGATTTAATCAACCTATGATCTGTACAAAATATCCTTATGCAGATCAATTTTATGGACTCATCTCAACTTATGGACCACAGATTCCGGGGCGTGTAATGCTGCCACTTAACATGACATCTGATGATGGACCGATTTATGTTAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCTCGCGCCAAAGCTGTACTTGGCCAGAAATTGATTAAACGTCGCAAGCCCTACATGCATGAGTCACGCCATCTCCATGCATTGCGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAGAAATCTGCCAGCGGAGATGGTAAAACGGGAAGTAAAGTGCATAAATTTGACGGTCAACAATTGCAGTGCAGCGGCTCTCAGAGTTCCGAACTCCTTGAATCTGATGTTGGAACTTTAAACTCCTCAAAAGAAACTAATGGAAGCAGTCCGAATATTTCTGGGTCCGAGGTGACTAGTTTGTATTCAAGAGGAAATTCCACCATCAATCATCTTGGATATAATGTCCACTCATTGGCAGACATGATCGATGGTGGGCATGGCGTTATCATGCCCACCAAATGGGTTACAGCAGCTGGCAACTGCCGTAACCTTAAAGTTTGA 987 0.4387 MAMQTVYLKEHEGIAHNFVGQLSSGGTNNSAAVPWWSGFGSQSVYGESGGQIKSFSLEPPFSAVDQLAATASKQSVLGKGLTNHFTIFPDDFKMSSDAQKPHTAISLQSSLPDTPPRFELGFNQPMICTKYPYADQFYGLISTYGPQIPGRVMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHALRRPRGCGGRFLNTKKSASGDGKTGSKVHKFDGQQLQCSGSQSSELLESDVGTLNSSKETNGSSPNISGSEVTSLYSRGNSTINHLGYNVHSLADMIDGGHGVIMPTKWVTAAGNCRNLKV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04423 328 MobiDBLite consensus disorder prediction 210 236 - -
Trre14g04423 328 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
Trre14g04423 328 PRINTS CCAAT-binding transcription factor subunit B signature 164 186 IPR001289 GO:0003700|GO:0006355
Trre14g04423 328 ProSiteProfiles NF-YA/HAP2 family profile. 161 221 IPR001289 GO:0003700|GO:0006355
Trre14g04423 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 69 281 IPR001289 GO:0003700|GO:0006355
Trre14g04423 328 Gene3D - 161 223 - -
Trre14g04423 328 SMART cbf3 160 221 IPR001289 GO:0003700|GO:0006355
Trre14g04423 328 MobiDBLite consensus disorder prediction 249 279 - -
Trre14g04423 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04423 Trre-Chr14 52504508 52507245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04423 35 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.161 1.49e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Trre14g04423 CBFB_NFYA 2.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04423 K08064 - gmx:100527677 462.225