Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04422 ATGGCTGCTACTACAGCTTCTGTTTCATCTTCTAGCTTCAACAGAATCTACAGCCTCTCATTCACTCACTCTTCCATTTCTCTCACCACCACAAGCTTCTCTCAAAGACCCATTTCCCATAAACCCTTCAATCTCATTCTCAACTCTCAAAGTTTCAATCTTTTCCCTCTTCCACTTCATTCTCTTCTTCATCCCCCATTCGCCGCCGAAGTTGAATTCCAAACTTCTCAAGACACTACAATTTCACAACAGCAAGAACCAGAAATAGAACAAGAAACATCTGATAAACCAAATCAAGAGGAAGAACAGAAAGTATCAACCTCAGATGATGCTGGAAGACTCTATGTTGGAAATTTGCCATTTACAATGACTTCTTCACAATTGGCTGAAATCTTTGCAGAAGCTGGCACTGTTGTGTCTGTTGAGGTAGTCTATGATCGAGTTACAGACAGGAGCAGAGGATTTGCATTTGTTACAATGAAAAGTGTTGAAGAAGCTAAAGTAGCAATTCAAATGTTTGATGGCTCTCAAATTGGTGGTAGGAGTGCTAAGGTAAATTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTGGTAATGGTGCAAAAAAATAGAGACAACTACAAAGGCTTTTTAGATAGCCCTCACAAGATATACGCTGGAAACCTTGACTGGAGACTGAACTCTCAGGATCTTAGAGATGCCTTTGTGGGACAGCCAGGCATATTGGGTGCCAAAGTCATCTATGAGAAGGACAATGGAAGATCTCGAGGTTTCGGATTTGTCACTTTTGAAACTGCTGAGGATTCACAGGCTGCTTTGAACGCTATGAACGGTGTGGAGGTTCAAGGTCGGCCCTTGCGATTGAATTTGGCATCAAACAGAACATAA 888 0.4178 MAATTASVSSSSFNRIYSLSFTHSSISLTTTSFSQRPISHKPFNLILNSQSFNLFPLPLHSLLHPPFAAEVEFQTSQDTTISQQQEPEIEQETSDKPNQEEEQKVSTSDDAGRLYVGNLPFTMTSSQLAEIFAEAGTVVSVEVVYDRVTDRSRGFAFVTMKSVEEAKVAIQMFDGSQIGGRSAKVNFPEVPKGGERLVMVQKNRDNYKGFLDSPHKIYAGNLDWRLNSQDLRDAFVGQPGILGAKVIYEKDNGRSRGFGFVTFETAEDSQAALNAMNGVEVQGRPLRLNLASNRT 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04422 295 SMART rrm1_1 113 186 IPR000504 GO:0003723
Trre14g04422 295 SMART rrm1_1 216 289 IPR000504 GO:0003723
Trre14g04422 295 SUPERFAMILY RNA-binding domain, RBD 211 294 IPR035979 GO:0003676
Trre14g04422 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Trre14g04422 295 MobiDBLite consensus disorder prediction 76 109 - -
Trre14g04422 295 MobiDBLite consensus disorder prediction 89 108 - -
Trre14g04422 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Trre14g04422 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Trre14g04422 295 SUPERFAMILY RNA-binding domain, RBD 108 188 IPR035979 GO:0003676
Trre14g04422 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Trre14g04422 295 CDD RRM1_PSRP2_like 113 192 - -
Trre14g04422 295 Gene3D - 198 295 IPR012677 -
Trre14g04422 295 Gene3D - 69 197 IPR012677 -
Trre14g04422 295 CDD RRM2_NsCP33_like 216 291 - -
Trre14g04422 295 PANTHER OS02G0815200 PROTEIN 27 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04422 Trre-Chr14 52501632 52503022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04422 98 294 Eukaryotic Initiation Factors Gene Family AT3G16380 36.634 1.88e-26 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04422 - - tpra:123890310 476.092