Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04417 ATGGATCATGATGAGATCGACATCGATGTTCCTTCATTCTTTGTTTGTCCTATATCATTAGAAATCATGAAAGATCCGGTAACCGTATCAACCGGTATAACTTACGATAGAGAAAGTATCGAAAAATGGTTGATTTCTAAGAAAAACAAAACATGTCCTGTTACAAAACAAAAATTATCAGATTACACTGATCTTACACCTAACCATACACTTAGAAGACTAATTCAAGCATGGTGCACATTAAATGCTTCACAAGGAGTTGAAAGGATTCCAACACCAAAACCACCAACAAACAAAATCCAAATCACAAAACTCATCAAAGAAGCTTCTCATTCATCTCTCACCATTCAGATTAATTGTCTTAAAAGACTTAGATCAATTGCTTCTGGAAGTGAAACAAATAAACGTATCATGGAAGATGCAGGTGTTGTTGAGTTTTTAGCTTCTATTGTAATAAACAATAGTTGTAACATTGACCCTGCATCTTTGTTATCTGAGGTTAACATTAATCCTGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTTTCTGAGACTGGATTGAAGAATCTTCTGGCTTTTAGAAACGGCGAATTTATTGAGTCATTAACAAAAGTTATGCAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGTTAAAATCTATGTCACAAGTAGCAGAAGCAGTGCAGTTACTACATCAAAAAACTGAACTGTTTGTTGAACTGGTTCAAGTTTTGAAGGATCAAATATCTCAAAAGGTATCAAAAGCAACACTTCAGACATTGATTGAACTCTGTCCATGGGGAAGAAACAGAATCAGAGGTGTTGAAGCAGGAACAGTTCCTGTTTTGATAGAACTTTTATTAGAAAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAATGTGCTGAAGGAAGAGCTGAACTTTTGAAACATGCAGCTGGTCTTGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACGCTCGCGAATGATAGAGCAGTGAGGATTCTGTTGTCTGTTTCTAAATTCTCTGCTACTCCTAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACAAAAGAGAAAGCTAGGGAGATACTTAAGATGCATGCTAGGGCATGGAGGAATTCTCCATGTATACCTAGTAATTTGCTTTCTTCATACCCCAATTATGCATGA 1266 0.357 MDHDEIDIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLISKKNKTCPVTKQKLSDYTDLTPNHTLRRLIQAWCTLNASQGVERIPTPKPPTNKIQITKLIKEASHSSLTIQINCLKRLRSIASGSETNKRIMEDAGVVEFLASIVINNSCNIDPASLLSEVNINPVDEALSILHNLHVSETGLKNLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSQVAEAVQLLHQKTELFVELVQVLKDQISQKVSKATLQTLIELCPWGRNRIRGVEAGTVPVLIELLLENCKDRKPNEMMLVLLENLCQCAEGRAELLKHAAGLAVVSKKILRVSTLANDRAVRILLSVSKFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04417 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
Trre14g04417 421 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Trre14g04417 421 PANTHER WDSAM1 PROTEIN 7 410 IPR045185 GO:0061630
Trre14g04417 421 SUPERFAMILY RING/U-box 4 83 - -
Trre14g04417 421 SUPERFAMILY ARM repeat 102 397 IPR016024 -
Trre14g04417 421 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Trre14g04417 421 Gene3D - 96 408 IPR011989 -
Trre14g04417 421 FunFam RING-type E3 ubiquitin transferase 3 88 - -
Trre14g04417 421 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Trre14g04417 421 CDD RING-Ubox_PUB 11 61 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04417 Trre-Chr14 52449917 52451182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04417 7 418 U-box Gene Family AT3G52450 57.506 4.20e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04417 - - mtr:25499491 740.725