Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04415 ATGGCAGCTTATTTTCATGGTAATTCTGAAATCCAATCAAGTGGCGGCGGCGGCGGCGGTGGTGCCGATGGACTTCAAACACTTGTTCTAATGAATCCAAGCTATATGCAATATTCAGACAATTCACAGCAACAACAAGCTCAACAGCCTTCTCATGCTGCCGCTGCAGGTAACTTTGTTTTTCTCAACTCAACAGCTGCAGAAAACAACTCCTTCTCACCTCACGCGCCACCTTCCAACACACAACAATTCGTCGGCATCCCTCTTGGGAACCAACACCAAATCCACGCGCACCACCATGATGTTGTCCCTTCCTTGCATGGCTTCCTTCCTCACATGCAGTACAATCAATGGAACACAATTGACCCAAATACAGCGGCGCGTGAAACTCCACGCGCTCAACAAGGATTGTCTTTAAGCCTCTCTTCACAGCCAGCACGGTTTATGTCGTTTCGAGAGGGTGCTATGTCTGGTGGATCGCCTTCGACTCCGGCTTCCGGGGTTACTACTAATAATAATAACAATGGGAATTCAGGGATTCAGGTTTTGAGTTCAAAGTATTTGAGGGCAGCGCATGAGCTTTTAGAAGAGGTTGTGAATGTTAATGTTGGTGTTGAATTGGGAAATAAGAAGAGTGGTGGATTGAACAAGGTGATCGGAGAATCGTCCGGAGTTGGAAGCGGAGGAGATGGATTAATTGTTGGTGGTGGTGGGGAGGGAAATGGGAAGCGGAGCACCGAGCTATCGACGGCGGAGAGACAAGAATTACAGATGAAGAAAGCTAAGCTAATTACCATGCTTGATGAGGTGGAACAAAGGTACAGACAATATCACCATCAAATGGAGGTTGTGGTCTCCTCATTTGAACAAGCAGCTGGCCTTGGTTCCGCGAGGACATACACTGCTCTTGCACTGCAAACAATCTCGAAACAATTTCGGTGTTTGAAAGATGCCATAACAGGACAAATTAAAGCTACAAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGTGGTAAAATTGAAGGTTCAAGGCTTAAATATGTTGATCATCAACTACGTCAACAACGTGCTTTACAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTCCTTCATCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACAGGGCTTACTAGGAGTCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTAGGCTTTGGAAGCCGATGGTTGAAGAAATGTACTTAGAGGAAATGAAGGAGAATGAACTAAATGGATCAGAAGATAAACCAAGCAAGAGCAATGAAGATTCATCTATGAAAGTTCTATCTCCTCAAGAGAAAGGTCTTAACTCTGAAACAGAACCCAAAGGTTACAATTCCACACAAGACATTTCCCAAAGCCAAGACACATCAATGATTTCTGTTTCTAGACCACAAACATCACCACATATTGGAAATGTTAGAAACCAATCAGGATTCAGCTTCATTGGATCATCAGAACTAGAAGGTATACCACAAACAAGTCCTAAAAAACCAAGGAACCATGAACTTATCCATAATCCTAATAGTTTCATTGATGTTAAGCACAATGAAGCAAATAATGAGATAAAATTTGGTGATGAGAGACAGAATAGAGATGGATACTCTTTTATGGGAAACCAAACAAATTTCATTGGTGGATTTGGACAATACCCAATTGGTGATATTGGTAGATTTGATCAAGAACAATTCACACCAAGGTTTTCAAGTAATGGTGTTTCACTCACTCTTGGTCTTGACTCAATACAAGGAAATCATCAACATCAAACATTTTTACCAAACCAAAACATTCAACTAGGAAGAAGCATTGACATAAGTGAACCAAATGAGTTTGGTTCCATAAACACTTCCTCTCCTCAATATGAAAATATCAACATGCAAAACCCAAAAAGGTTTGCTGCACAATTGTTACCAGATTTTGTGGCCTAA 2031 0.419 MAAYFHGNSEIQSSGGGGGGGADGLQTLVLMNPSYMQYSDNSQQQQAQQPSHAAAAGNFVFLNSTAAENNSFSPHAPPSNTQQFVGIPLGNQHQIHAHHHDVVPSLHGFLPHMQYNQWNTIDPNTAARETPRAQQGLSLSLSSQPARFMSFREGAMSGGSPSTPASGVTTNNNNNGNSGIQVLSSKYLRAAHELLEEVVNVNVGVELGNKKSGGLNKVIGESSGVGSGGDGLIVGGGGEGNGKRSTELSTAERQELQMKKAKLITMLDEVEQRYRQYHHQMEVVVSSFEQAAGLGSARTYTALALQTISKQFRCLKDAITGQIKATNKSLGEEDCFGGKIEGSRLKYVDHQLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKENELNGSEDKPSKSNEDSSMKVLSPQEKGLNSETEPKGYNSTQDISQSQDTSMISVSRPQTSPHIGNVRNQSGFSFIGSSELEGIPQTSPKKPRNHELIHNPNSFIDVKHNEANNEIKFGDERQNRDGYSFMGNQTNFIGGFGQYPIGDIGRFDQEQFTPRFSSNGVSLTLGLDSIQGNHQHQTFLPNQNIQLGRSIDISEPNEFGSINTSSPQYENINMQNPKRFAAQLLPDFVA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04415 676 MobiDBLite consensus disorder prediction 441 456 - -
Trre14g04415 676 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g04415 676 SUPERFAMILY Homeodomain-like 370 436 IPR009057 -
Trre14g04415 676 SMART prehox3 177 321 IPR006563 -
Trre14g04415 676 SMART HOX_1 369 433 IPR001356 GO:0003677
Trre14g04415 676 MobiDBLite consensus disorder prediction 441 512 - -
Trre14g04415 676 MobiDBLite consensus disorder prediction 156 174 - -
Trre14g04415 676 Pfam Associated with HOX 182 320 IPR006563 -
Trre14g04415 676 Gene3D - 372 449 - -
Trre14g04415 676 Pfam Homeobox KN domain 386 425 IPR008422 GO:0003677|GO:0006355
Trre14g04415 676 Coils Coil 253 273 - -
Trre14g04415 676 CDD homeodomain 369 430 IPR001356 GO:0003677
Trre14g04415 676 ProSiteProfiles 'Homeobox' domain profile. 366 429 IPR001356 GO:0003677
Trre14g04415 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 456 - -
Trre14g04415 676 MobiDBLite consensus disorder prediction 155 174 - -
Trre14g04415 676 MobiDBLite consensus disorder prediction 457 512 - -
Trre14g04415 676 FunFam BEL1-like homeodomain protein 9 372 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04415 Trre-Chr14 52425493 52430609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04415 1 676 Homeobox Transcription Factor Family AT2G35940 48.790 1.31e-165 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre14g04415 POX 3.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04415 - - gmx:100810901 889.026