Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04363 ATGTCATTACCAGAAACGGCGTCGTTATGGTGGAATAGTCCTCAACAACAACAACAGCAACAGAAAACGCAACGAGAAGAAGAAGGTGAAATAGAAGACGACGTCGTTTTAGAGACAATAACAAAACAGAAAACAACAACAACAGAAGAAGAAGAGAAAGAAGCCATGTTTGAGAAACCGTTAACACCAAGCGACGTAGGAAAATTGAACCGACTCGTAATACCAAAACAACACGCTGAAAGATATTTCCCACTCGACTCAGAAGAAGTAAAAGGTTTATTACTGAGTTTTGAAGACGAGTCAGGTAAATGTTGGAGATTCCGTTATTCTTATTGGAATAGTAGTCAGAGTTATGTTCTAACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCCGGCGACGTCGTTTTGTTTCAACGACACCGTACTCATCCGCAACGGTTTTTTATTTCTTGGAGGCGCCGCCATGGTTATGTTTCTAGTACTCCGCCGGCTCATGTTAGCACTGATGTTTCTGTTGGGTGGGCCAGAGGATTCTATCCTGCGCCAAATTCTTATCCTACGCATCATCACCCCTTGTCTTACCATGCAGGTGGAGGGTCCGAAAGTCAGAACATAAGCACGCCTTGTGGAAACAATTCGAGTTCGAGTACATCCAGGGTGCTGAGGCTGTTTGGAGTGAACATGGAATGCCAACCTGATAATAATATTAATATTAATATTAATGATTCCCAAACTAATTTGACACAACCAGATAATCAATGCTCTTATAATAATAATAATAATAATCCACAATTCTACCACCACCTCCATCATCAACCTCCTTCAAACCCTCACCATCACATGCTACGTCAACAACCATATTAA 876 0.4098 MSLPETASLWWNSPQQQQQQQKTQREEEGEIEDDVVLETITKQKTTTTEEEEKEAMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEVKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTHPQRFFISWRRRHGYVSSTPPAHVSTDVSVGWARGFYPAPNSYPTHHHPLSYHAGGGSESQNISTPCGNNSSSSTSRVLRLFGVNMECQPDNNINININDSQTNLTQPDNQCSYNNNNNNPQFYHHLHHQPPSNPHHHMLRQQPY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04363 291 SUPERFAMILY DNA-binding pseudobarrel domain 54 158 IPR015300 -
Trre14g04363 291 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g04363 291 SMART B3_2 57 159 IPR003340 GO:0003677
Trre14g04363 291 MobiDBLite consensus disorder prediction 201 217 - -
Trre14g04363 291 ProSiteProfiles B3 DNA-binding domain profile. 57 159 IPR003340 GO:0003677
Trre14g04363 291 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 254 IPR044800 GO:0003700
Trre14g04363 291 Pfam B3 DNA binding domain 57 158 IPR003340 GO:0003677
Trre14g04363 291 MobiDBLite consensus disorder prediction 263 291 - -
Trre14g04363 291 MobiDBLite consensus disorder prediction 23 59 - -
Trre14g04363 291 CDD B3_DNA 56 146 IPR003340 GO:0003677
Trre14g04363 291 Gene3D - 45 165 IPR015300 -
Trre14g04363 291 FunFam B3 domain-containing protein 50 167 - -
Trre14g04363 291 MobiDBLite consensus disorder prediction 1 62 - -
Trre14g04363 291 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04363 Trre-Chr14 52023449 52025334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04363 50 256 RAV Transcription Factor Family AT5G06250 52.232 3.17e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g04363 B3 1.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04363 K09287 - gmx:100802734 305.834