Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04332 ATGCACAAAATGCCCGGGACAAGACAGAGAGATGCAACAGCCGAAAATTCAGAGTCACCAGGGGGGACCAGCGAACCTGAAAAGCCCACAAATTCTGGTGAGCAGGTAGATCTTAATGTGGACAATGATCAAGAGGAGACGTCAGAGGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAAGAGGAGGAAGAAGAGGAAGACGGAGAAAATAAGCCCTCAGATGGTGAAGATGAGATGAAAGTGGAAGATACTAAAGATGAGGCTGAGAAAAAGAAGCATGCTGAGCTTCTTGCACTTCCTCCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCATGAAGTTTCTGAAAAAGATTTAAGGGTGTTTTGTCAATCTGTGGGAGAAGTAGCACAGGTCAGGATTATGAAGGGGAAAGAATCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATGGAGGAGCTGAACAATTCTGAATTTAAGGGAAAAAAAATAAAGTGCTCACCATCTCAAGTTAAGCATAGGTTATTCATGGGTAATGTTCCTAAAGATTGGACTGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGCCCTGGAGTTATTTCTGTGGAACTATTGAAGGATCCACAGAGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAGACTCAAAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCCGAATCATCATCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGCAGACATAACTCAGAATCGTCTGAGGGAGCTGTTTGAACATCATGGAAAGATCACTAAAGTGGCTCTCCCTCCTGCTAAAGCTGGACAAGAAAAGAGTAGATATGGTTTTGTGCACTTTGCTGATAGGTCAAGTGCAATGAAGGCGTTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAACATTGGAATGCTCACTCGCTAAGCCACAGGCAGATCAGAAGTCATCTGGTACTTCAAATTCGCACCAGTCAGCTGTACTTCCTTATCCATCTCCTCTTGGATATGGTGCTCTTGGTGCAGGATATGGTGCTCTTGGTGCAGGATATGGTACTGCTGGCTTTGCACCGCCACTGATGTATGGTCCGGGAGCAACTCCTGCTGGCATGGCAATGATGCCAATGCTTTTACCGGATGGAAGAATTGCATATGTTTTGCAACAGCCAGGTTTGCAGCAGCCAGGTTTGCAGCAGCCAGGTTTGCAGCAGCATGCTCCATCACCAGTATCCAGACATGGTAGGAATAGTGGTGGTAGCTCAAGTGGTGAAAAGCGCAGTAACGATAATAACCGTAATCGTGGTCATGGCCGATATAATCCCTACTAA 1479 0.4435 MHKMPGTRQRDATAENSESPGGTSEPEKPTNSGEQVDLNVDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEEDGENKPSDGEDEMKVEDTKDEAEKKKHAELLALPPHGSEVYIGGIPHEVSEKDLRVFCQSVGEVAQVRIMKGKESNGYAFVTFKTKELASKAMEELNNSEFKGKKIKCSPSQVKHRLFMGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSDSKFKLDNNAPTVSWADPRNSESSSSSQVKAVYVKNLPADITQNRLRELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNSHQSAVLPYPSPLGYGALGAGYGALGAGYGTAGFAPPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLQQPGLQQPGLQQHAPSPVSRHGRNSGGSSSGEKRSNDNNRNRGHGRYNPY 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04332 492 CDD RRM_SF 114 183 - -
Trre14g04332 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 361 IPR000504 GO:0003723
Trre14g04332 492 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 190 270 - -
Trre14g04332 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 258 IPR000504 GO:0003723
Trre14g04332 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Trre14g04332 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 354 IPR000504 GO:0003723
Trre14g04332 492 SMART rrm1_1 113 183 IPR000504 GO:0003723
Trre14g04332 492 SMART rrm1_1 190 267 IPR000504 GO:0003723
Trre14g04332 492 SMART rrm1_1 284 357 IPR000504 GO:0003723
Trre14g04332 492 Coils Coil 40 79 - -
Trre14g04332 492 MobiDBLite consensus disorder prediction 444 492 - -
Trre14g04332 492 MobiDBLite consensus disorder prediction 1 98 - -
Trre14g04332 492 Gene3D - 190 270 IPR012677 -
Trre14g04332 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 187 IPR000504 GO:0003723
Trre14g04332 492 SUPERFAMILY RNA-binding domain, RBD 278 377 IPR035979 GO:0003676
Trre14g04332 492 MobiDBLite consensus disorder prediction 10 38 - -
Trre14g04332 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 271 IPR000504 GO:0003723
Trre14g04332 492 SMART rrm2_1 113 183 IPR003954 GO:0003676
Trre14g04332 492 Gene3D - 271 396 IPR012677 -
Trre14g04332 492 SUPERFAMILY RNA-binding domain, RBD 109 273 IPR035979 GO:0003676
Trre14g04332 492 MobiDBLite consensus disorder prediction 39 80 - -
Trre14g04332 492 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 272 382 - -
Trre14g04332 492 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 18 482 - -
Trre14g04332 492 MobiDBLite consensus disorder prediction 444 476 - -
Trre14g04332 492 Gene3D - 34 189 IPR012677 -
Trre14g04332 492 MobiDBLite consensus disorder prediction 81 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04332 Trre-Chr14 51762341 51766325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04332 114 427 Eukaryotic Initiation Factors Gene Family AT4G34110 23.823 7.26e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04332 K13161 - gmx:100798476 609.757