Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04282 ATGCCAAAACTTGTTCTTCACCACCACCACCCTGCAGAATCCCATCAACAACAACAATCTTCTGTTCCTTCTGCACTTCCTTTCTTTGTTCCTCCTCAATCCAACAACACCAAACTTACCAACTTGTCAGATTCAATAACATTACCACATTCCAATATCACTAACAGATCATTTCCCAGAAATATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAAGCTTTGATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATTAAGAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATAACCCTCTTCAACATTATCAATCTACATCTTTGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGTCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAAAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAATTAGTAGTGCCAGTAATGGTGGTGGTGGTGGAACTTTCTCTGCTTCACAGTCTTTTGCTACTGCCTCATTGAAATCTCCTTTTAATCTTCACCTCAATGAATGTTCCTCTGGGACCAAGAATGAAGGCAAAAGCAGCTTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGAAAATGCTAAGACATTTTTTTGACGATTGGCCAAGATCACTACAACAAAAGTCTGACAATGCTGAAAACAACAACAATGGTGGTGGGTCATCCTCCACATGTCTCTCAATTTCAATGCCAGGAAATAGTAACACTTCTTCAGATATATCATTGAAACTGTCCACTGGCTATGGAGAAGAACCATGCCCAAGAAATGTTAATGTGGGCCTACAAACTGAGCAACAACAACAACTTCAAGTGAATTGGGTCGGTGGATGGAGTTCAGGTAATCAAGTGTCTTCAATGGGAGGACCACTTGCTGAAGCACTTAGATCATCCACCACAACTTCTTCACCTACTAGTGTTTTACATCAATTGTCACGTTGTTCTGCTTCTGAGACCAGCTACATTAGTGCCTAA 1128 0.4202 MPKLVLHHHHPAESHQQQQSSVPSALPFFVPPQSNNTKLTNLSDSITLPHSNITNRSFPRNIGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHNPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPISSASNGGGGGTFSASQSFATASLKSPFNLHLNECSSGTKNEGKSSLFESEDHVGGDGRSGGKMLRHFFDDWPRSLQQKSDNAENNNNGGGSSSTCLSISMPGNSNTSSDISLKLSTGYGEEPCPRNVNVGLQTEQQQQLQVNWVGGWSSGNQVSSMGGPLAEALRSSTTTSSPTSVLHQLSRCSASETSYISA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04282 375 MobiDBLite consensus disorder prediction 336 358 - -
Trre14g04282 375 MobiDBLite consensus disorder prediction 226 255 - -
Trre14g04282 375 MobiDBLite consensus disorder prediction 220 292 - -
Trre14g04282 375 ProSiteProfiles QLQ domain profile. 65 100 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g04282 375 MobiDBLite consensus disorder prediction 177 194 - -
Trre14g04282 375 Pfam WRC 135 177 IPR014977 -
Trre14g04282 375 PANTHER GROWTH-REGULATING FACTOR 5 34 288 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre14g04282 375 MobiDBLite consensus disorder prediction 256 292 - -
Trre14g04282 375 SMART QLQ_2 64 100 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g04282 375 MobiDBLite consensus disorder prediction 1 23 - -
Trre14g04282 375 ProSiteProfiles WRC domain profile. 134 178 IPR014977 -
Trre14g04282 375 MobiDBLite consensus disorder prediction 163 194 - -
Trre14g04282 375 Pfam QLQ 65 98 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04282 Trre-Chr14 51338756 51342040 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04282 62 362 GRF Transcription Factor Family AT3G52910 53.165 9.03e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre14g04282 WRC 4.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04282 - - aip:107648821 478.404