LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g04281	ATGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAGGAACAACATTCCACAAAGATGCCAAAACTTGTTCTTCACCACCACCACCCTGCAGAATCCCATCAACAACAACAATCTTCTGTTCCTTCTGCACTTCCTTTCTTTGTTCCTCCTCAATCCAACAACACCAAACTTACCAACTTGTCAGATTCAATAACATTACCACATTCCAATATCACTAACAGATCATTTCCCAGAAATATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAAGCTTTGATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATTAAGAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATAACCCTCTTCAACATTATCAATCTACATCTTTGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGTCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAAAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAATTAGTAGTGCCAGTAATGGTGGTGGTGGTGGAACTTTCTCTGCTTCACAGTCTTTTGCTACTGCCTCATTGAAATCTCCTTTTAATCTTCACCTCAATGAATGTTCCTCTGGGACCAAGAATGAAGGCAAAAGCAGCTTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGAAAATGCTAAGACATTTTTTTGACGATTGGCCAAGATCACTACAACAAAAGTCTGACAATGCTGAAAACAACAACAATGGTGGTGGGTCATCCTCCACATGTCTCTCAATTTCAATGCCAGGAAATAGTAACACTTCTTCAGATATATCATTGAAACTGTCCACTGGCTATGGAGAAGAACCATGCCCAAGAAATGTTAATGTGGGCCTACAAACTGAGCAACAACAACAACTTCAAGTGAATTGGGTCGGTGGATGGAGTTCAGGTAATCAAGTGTCTTCAATGGGAGGACCACTTGCTGAAGCACTTAGATCATCCACCACAACTTCTTCACCTACTAGTGTTTTACATCAATTGTCACGTTGTTCTGCTTCTGAGACCAGCTACATTAGTGCCTAA	1194	0.4196	MDFHLKQWRNQHESEEEQHSTKMPKLVLHHHHPAESHQQQQSSVPSALPFFVPPQSNNTKLTNLSDSITLPHSNITNRSFPRNIGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHNPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPISSASNGGGGGTFSASQSFATASLKSPFNLHLNECSSGTKNEGKSSLFESEDHVGGDGRSGGKMLRHFFDDWPRSLQQKSDNAENNNNGGGSSSTCLSISMPGNSNTSSDISLKLSTGYGEEPCPRNVNVGLQTEQQQQLQVNWVGGWSSGNQVSSMGGPLAEALRSSTTTSSPTSVLHQLSRCSASETSYISA	397

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre14g04281	397	PANTHER	GROWTH-REGULATING FACTOR 5	42	310	IPR031137	GO:0005634\|GO:0006351\|GO:0032502
Trre14g04281	397	MobiDBLite	consensus disorder prediction	199	216	-	-
Trre14g04281	397	Pfam	WRC	157	199	IPR014977	-
Trre14g04281	397	MobiDBLite	consensus disorder prediction	278	314	-	-
Trre14g04281	397	Pfam	QLQ	87	120	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
Trre14g04281	397	ProSiteProfiles	QLQ domain profile.	87	122	IPR014978	GO:0005524\|GO:0005634\|GO:0006355
Trre14g04281	397	MobiDBLite	consensus disorder prediction	185	216	-	-
Trre14g04281	397	MobiDBLite	consensus disorder prediction	1	23	-	-
Trre14g04281	397	MobiDBLite	consensus disorder prediction	242	314	-	-
Trre14g04281	397	MobiDBLite	consensus disorder prediction	248	277	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g04281	Trre-Chr14	51338690	51342040	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre14g04281	1	384	GRF Transcription Factor Family	AT3G52910	47.870	2.00e-87	268

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GRF	Trre14g04281		WRC	5e-22	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g04281	-		-	aip:107648821	517.309

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