Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04281 ATGGACTTTCATCTGAAACAATGGAGAAACCAGCATGAGTCAGAAGAGGAACAACATTCCACAAAGATGCCAAAACTTGTTCTTCACCACCACCACCCTGCAGAATCCCATCAACAACAACAATCTTCTGTTCCTTCTGCACTTCCTTTCTTTGTTCCTCCTCAATCCAACAACACCAAACTTACCAACTTGTCAGATTCAATAACATTACCACATTCCAATATCACTAACAGATCATTTCCCAGAAATATTGGAAGCCATTTTAGCTTATCTCAATGGCAAGAACTTGAGTTACAAGCTTTGATATTTAGATACATGTTGGTTGGTGCTTCTGTTCCTCCTGAACTTCTTCAACCTATTAAGAAAAGTCTTCTTCATTCATCTCCTTATTTTCTTCATAACCCTCTTCAACATTATCAATCTACATCTTTGTTGCAAGCAGGGTATTGGGGAAGAGGAGCAATGGATCCAGAGCCTGGTCGTTGCCGGAGAACCGACGGTAAAAAATGGCGGTGTTCGAGGGATGTGGTGACTGGACAAAAGTACTGTGAAAGACATATGCATCGTGGTAGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACACCAATTAGTAGTGCCAGTAATGGTGGTGGTGGTGGAACTTTCTCTGCTTCACAGTCTTTTGCTACTGCCTCATTGAAATCTCCTTTTAATCTTCACCTCAATGAATGTTCCTCTGGGACCAAGAATGAAGGCAAAAGCAGCTTATTTGAAAGCGAAGATCATGTGGGTGGGGATGGAAGATCAGGTGGGAAAATGCTAAGACATTTTTTTGACGATTGGCCAAGATCACTACAACAAAAGTCTGACAATGCTGAAAACAACAACAATGGTGGTGGGTCATCCTCCACATGTCTCTCAATTTCAATGCCAGGAAATAGTAACACTTCTTCAGATATATCATTGAAACTGTCCACTGGCTATGGAGAAGAACCATGCCCAAGAAATGTTAATGTGGGCCTACAAACTGAGCAACAACAACAACTTCAAGTGAATTGGGTCGGTGGATGGAGTTCAGGTAATCAAGTGTCTTCAATGGGAGGACCACTTGCTGAAGCACTTAGATCATCCACCACAACTTCTTCACCTACTAGTGTTTTACATCAATTGTCACGTTGTTCTGCTTCTGAGACCAGCTACATTAGTGCCTAA 1194 0.4196 MDFHLKQWRNQHESEEEQHSTKMPKLVLHHHHPAESHQQQQSSVPSALPFFVPPQSNNTKLTNLSDSITLPHSNITNRSFPRNIGSHFSLSQWQELELQALIFRYMLVGASVPPELLQPIKKSLLHSSPYFLHNPLQHYQSTSLLQAGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVTGQKYCERHMHRGRNRSRKPVELPTPISSASNGGGGGTFSASQSFATASLKSPFNLHLNECSSGTKNEGKSSLFESEDHVGGDGRSGGKMLRHFFDDWPRSLQQKSDNAENNNNGGGSSSTCLSISMPGNSNTSSDISLKLSTGYGEEPCPRNVNVGLQTEQQQQLQVNWVGGWSSGNQVSSMGGPLAEALRSSTTTSSPTSVLHQLSRCSASETSYISA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04281 397 PANTHER GROWTH-REGULATING FACTOR 5 42 310 IPR031137 GO:0005634|GO:0006351|GO:0032502
Trre14g04281 397 MobiDBLite consensus disorder prediction 199 216 - -
Trre14g04281 397 Pfam WRC 157 199 IPR014977 -
Trre14g04281 397 MobiDBLite consensus disorder prediction 278 314 - -
Trre14g04281 397 Pfam QLQ 87 120 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g04281 397 ProSiteProfiles QLQ domain profile. 87 122 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g04281 397 MobiDBLite consensus disorder prediction 185 216 - -
Trre14g04281 397 MobiDBLite consensus disorder prediction 1 23 - -
Trre14g04281 397 MobiDBLite consensus disorder prediction 242 314 - -
Trre14g04281 397 MobiDBLite consensus disorder prediction 248 277 - -
Trre14g04281 397 SMART QLQ_2 86 122 IPR014978 GO:0005524|GO:0005634|GO:0006355
Trre14g04281 397 MobiDBLite consensus disorder prediction 358 379 - -
Trre14g04281 397 ProSiteProfiles WRC domain profile. 156 200 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04281 Trre-Chr14 51338690 51342040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04281 1 384 GRF Transcription Factor Family AT3G52910 47.870 2.00e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Trre14g04281 WRC 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04281 - - aip:107648821 517.309