Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04270 ATGTCTGAAAACCCTACAACTTATGCATCCTCATCTTCGTCGGGCAAAGTTTTGGCTGGTCGTCATCCGGTGTACCGAGGAGTGAGACGTAGGAATAACGGAAAATGGGTATCTGAAATCCGCGAACCTAAAAAACCAAATAGAATTTGGTTAGGAACATTTCCAACACCTGAAATGGCAGCTATTGCTTATGATGTAGCTGCTCTTGCTCTTAAGGGTAAAAATGCTGAATTAAATTTCCCGAATTCTTCTTCTTCTTTGCCCGTGCCTGAGTCTTCCTCTGCTCGCGATATTCAGACAGCTGCAGCTTGTGCTGCAGCTGCCGTAGGCGCAGCAGAGGATGCACTCGCAAGTAATATTAATGAGGGTGTTGGAAAGGGAAATAATAATCGTACGGCAATGGCGCCGCATGAATTTTCCGCAAGTGCGAATGAGAACAACAATGTTAGCTATGAGTTTGTTGATGAGGATTCGATATTTGATATGCCTAATGTTTTGGTTAATATGGCTGAAGGAATGCTACTCAGTCCTCCTCGTTTTGATTTTGCTAGTAATGAGTATGATGCACAAGAAAATGTTATGTCTGATGATTCAAACCTTTGGAGTTATCCTTATTTCCCATAA 624 0.4231 MSENPTTYASSSSSGKVLAGRHPVYRGVRRRNNGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKNAELNFPNSSSSLPVPESSSARDIQTAAACAAAAVGAAEDALASNINEGVGKGNNNRTAMAPHEFSASANENNNVSYEFVDEDSIFDMPNVLVNMAEGMLLSPPRFDFASNEYDAQENVMSDDSNLWSYPYFP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04270 207 MobiDBLite consensus disorder prediction 1 17 - -
Trre14g04270 207 Gene3D AP2/ERF domain 24 82 IPR036955 GO:0003700|GO:0006355
Trre14g04270 207 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Trre14g04270 207 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Trre14g04270 207 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Trre14g04270 207 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 203 IPR045277 GO:0003700
Trre14g04270 207 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
Trre14g04270 207 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Trre14g04270 207 MobiDBLite consensus disorder prediction 1 23 - -
Trre14g04270 207 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Trre14g04270 207 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Trre14g04270 207 PRINTS Ethylene responsive element binding protein signature 63 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04270 Trre-Chr14 51220164 51225241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04270 19 204 AP2-EREBP Transcription Factor Family AT2G36450 62.567 1.78e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre14g04270 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04270 - - gmx:100799620 229.18