Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04268 ATGGAAATGGAAGACCATAATCATCATCATCATCGTCAACATCACCATGAACAGCATCAACAACAACAACAACACTATGTTAATGTTACTAGTAACACTAACAGTATCACTGATTTCAGACAACTCATGAATATTGGACAAAGAACAACATCAACAACAACAACAGCAACAGATCATTTTCCTACGGCGGAGTTATTCCCCTCCGCCGGCAACAACCCAAATCTGACAGTGACACCAACACATCAACAACACTATGAGATGATCATGTTTGGTCGCCAAGTATCTGATATAATGCCTCGCTCATTTCATGACTTTGTTTCAACAGATTCTGCTGCTGCTATTGCCACCGCCACCACTACAACTAGTGCTTCAACTCCTACTCTTAGTGGTAATTTAGAACCCGAAACAACAACAACAACCGGTTGCTTAGGTATTGTTGATGCTTCAAATGGAAGATGGCCTAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCATAAGGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGTGAAGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAGAAAACAAAAGAAGGAAAAGCAGGAAGACAAGATGGAAAACATTATAGATTCTTTCGTCAACTTGAAGCCTTATATGGTCAAAACAATAACCCCTCTTCATCTTCACTCCCAGAAAACAATTTTTGTTCCAACAACAATCAAGATATGTTTCATTCTCAAAACAAACATTGTGATAGCCTCAGCCTCACAAACTCAACTGAATTTGACACATCGTCGTCCGATAACGATGATCGTAATAATGAAAGCTCCATGGAGAAAAGAAAAAAGAAGATGAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAAATGAAGAAGTTGGTGGTGAAACAAGAGGAATGGTTGGAGAAACTCACAAAAACATTGGAACAAAAGGAAAAGGAAAGAGTGTTAAGAGAAGAAGAATGGAGGAAACAAGAGAAAGAACGGTTAGAAAAAGAGCACAAATTTTGGGCTAAAGAAAGAGCATGGATTGAAGCAAGGGATGCTGCTTTAATGGAGGCTTTGCATAAATTTAAAGGAAATGATGAGATAATAAATACTCAATCTTCTTCTCATGATGTCAACAAAAAAAGAAAAGAAAACTCAAGAAGTTGTTTTTACTTTGATAATAACAACAATGTTGATAGGTCTTGTTTGTATAATAACAATGGAGGAGGTTCTTATTGTGGTGATGTTAATGATCAAAGGGAAGAACTTGGGAGAGTAGTAAGAAATGATGGTTCAAATTCTAGTAATGTTATTGTTGCAGCTGAAAATTGTTTTCCATTGTTGATGAGTGATGGAGGAAATTTGTGGGAGAATTACAGCTTAAAGGTTAGTAAAGCAAATCAAAACCAGTGA 1500 0.3687 MEMEDHNHHHHRQHHHEQHQQQQQHYVNVTSNTNSITDFRQLMNIGQRTTSTTTTATDHFPTAELFPSAGNNPNLTVTPTHQQHYEMIMFGRQVSDIMPRSFHDFVSTDSAAAIATATTTTSASTPTLSGNLEPETTTTTGCLGIVDASNGRWPRQETLTLLEIRSRLDPQFKEATHKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGQNNNPSSSSLPENNFCSNNNQDMFHSQNKHCDSLSLTNSTEFDTSSSDNDDRNNESSMEKRKKKMSGRSFWKVKIKDFIDSQMKKLVVKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALHKFKGNDEIINTQSSSHDVNKKRKENSRSCFYFDNNNNVDRSCLYNNNGGGSYCGDVNDQREELGRVVRNDGSNSSNVIVAAENCFPLLMSDGGNLWENYSLKVSKANQNQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04268 499 MobiDBLite consensus disorder prediction 279 303 - -
Trre14g04268 499 Gene3D - 153 215 - -
Trre14g04268 499 MobiDBLite consensus disorder prediction 285 303 - -
Trre14g04268 499 ProSiteProfiles Myb-like domain profile. 145 210 IPR001005 -
Trre14g04268 499 MobiDBLite consensus disorder prediction 242 261 - -
Trre14g04268 499 Coils Coil 327 354 - -
Trre14g04268 499 CDD GT1 152 217 - -
Trre14g04268 499 FunFam trihelix transcription factor PTL-like 153 215 - -
Trre14g04268 499 Pfam Myb/SANT-like DNA-binding domain 152 238 IPR044822 -
Trre14g04268 499 PANTHER FI21293P1 119 394 - -
Trre14g04268 499 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04268 Trre-Chr14 51189749 51192174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04268 407 494 Trihelix Transcription Factor Family AT5G03680 37.374 1.58e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre14g04268 Myb_DNA-bind_4 4.7e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04268 - - psat:127125684 680.248