Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04263 ATGGAGAGCACACGTAGATCGTTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCGAATCCAACTGCACGACCGTTTTCTCAACGACAAGGTGGTTCTGGTGTTGCTTCGATGTTGTCATCTGGTAGGTTTCCAATGAATGATAGAGACTCCGATAGTAGTGATGGTGGTGGTGGTTATCATCCACAGCCACCGCCGCATCAAGAACTTGTGACTCAGTATAAGGCTGCTCTTGCTGAACTTACTTTCAACTCGAAACCTATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGACTACCCGAGGTATACTGCAATACATACAGGCAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTTTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCACTCCCGCAGTCAATGGTTCAGCTTCTGCATCTGCCGCCCTTAGAAGTGATTCTCAGTCTCAACGCCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAGGGAGTATTTAATGATATGAGTGGAGTTATTTCAAACTCAAATGAGGACCCAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTACTCAGAGAGATGCATTTAATGACTCTGTTCCTGACAAGAGCATTGGCGGCGCCTACGGAGACAATGAATACAATTCTAGTCTTTCCAATAATTTGGGCTCAGGTGTTGGAAGAACTGGAAATAGGCTCATTGGCGGTGTTGCAGAGACCTTATCAGGGCAAAGAAGTGGTTTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCACCGAAACCTATGAATTTGGATGCACATAACATCAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACTCTGGTTTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAGCTCAGACCCGTGGATGGCCGATGATGATAATTTGGAAAGTGAAGATCACCTCCAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATACCCATTGTTAAGAAACAACTACCATCATCCGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTGGCAAATTGAATATGAAGTCAGGTCACTCAGAAATATCTGTTTCTGCTCCTAGTGGCTTACCTAAAAGTTCAAATTCTTTGGCTGCGAAGATGAGGAATCAGTCTTCTATGCCGCATACAACAATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGGGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACAACAGTCTCTATCAGTGCCAGTAACAGCACATCAACCTCCTTCAAGTCAATATATTAGAGATCCCGCACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCACAAGAAAAGGACATGCGGGGTCCATTATCTTCAGCAACTTCTTTCCAGCCAAAACCTCAGCAACGGCAGCTGGCCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAACCACAGCCACTTCAGAAAAGTCAGCCACAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCAAACAAATCAATTACCAGAAGTCTGGATGCAAGTAATCGTACAGCTCAATCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTACCACATTAGTTTCTCCGGGTTCTTCAACCGTGTCATTAGGTTCCCCAAATGATTATCCACAGACTTTGCCAAAACTACTTCAAGGGAAGGCTGGAAAAAAGCAAAAGGATTCTAATCAACCCTCTGCTCCCTCTAATGAACGCGGCGCATCAGCTCCGAGCTCAAATGCCGCCAATAAGAATACCTTATATCCAATTTCAAATCTTTTAAGCTCTTTAGTTGCCAAAGGTTTGATATCTGCAGGAGCAGACTCAGCAACTGTATTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGAAAGCATTACTGCCAGTTCCTCTTTGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGGTAAAGTCTTCCAGAGATGAGACGGGTGCTGCTGCAAAAGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGTTGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAAGAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAGTGGTCCGACTGGAGCATCAAGAGGATGGTATGTTAAGTCAGAGGACTGGATTGCTGGCAAGGCCAAATATCTATCCGAGTCTGAATTTACCGATTCAGCCGATGAATATGATGATAAAATTGCAGAGGACAGTCAATTGGATTCTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTACTGTGTGGAGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGCGATAGTGAGATGGAAAGTATAAATTTGGGCCCCATCATTCATGCTAGATGCTTATCCGAGAACTCAATATCTGGTGTGACCAATACAGAACATGATTAG 3012 0.4406 MESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGSGVASMLSSGRFPMNDRDSDSSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASAALRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNDMSGVISNSNEDPERPDRALGAARPWLDPRINMHNNQRTQRDAFNDSVPDKSIGGAYGDNEYNSSLSNNLGSGVGRTGNRLIGGVAETLSGQRSGFSLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGLPDHVPNVSSNLSSDPWMADDDNLESEDHLQITHPIGRKVDKEIPIVKKQLPSSGGHPSLSWELQKQIPSGKLNMKSGHSEISVSAPSGLPKSSNSLAAKMRNQSSMPHTTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVPVTAHQPPSSQYIRDPAPAIGPNVQVGNFRKSQEKDMRGPLSSATSFQPKPQQRQLAPSQAEVTLKAKQPLKSKVSLAKAKTTATSEKSATKSLPAPSVKSGIIPNKSITRSLDASNRTAQSGVKPTRSVGPSPTTLVSPGSSTVSLGSPNDYPQTLPKLLQGKAGKKQKDSNQPSAPSNERGASAPSSNAANKNTLYPISNLLSSLVAKGLISAGADSATVLPSEMVMRSKDQTESITASSSLPVASAPDSAAVPVKSSRDETGAAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVITELLVELPHHCSNCGIRLKEQEQFDRHLEWHATKEREQSGPTGASRGWYVKSEDWIAGKAKYLSESEFTDSADEYDDKIAEDSQLDSMVVADENQCLCVLCGELFEDVYCQERDQWMFKGAVYLNNSDSDSEMESINLGPIIHARCLSENSISGVTNTEHD 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04263 1003 MobiDBLite consensus disorder prediction 706 733 - -
Trre14g04263 1003 SMART 558neu5 79 201 IPR006569 -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 577 601 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 1 20 - -
Trre14g04263 1003 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Trre14g04263 1003 CDD CID_Pcf11 81 193 IPR047415 -
Trre14g04263 1003 ProSitePatterns Zinc finger C2H2 type domain signature. 853 873 IPR013087 -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 517 733 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 213 276 - -
Trre14g04263 1003 FunFam polyadenylation and cleavage factor homolog 4 73 201 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 467 490 - -
Trre14g04263 1003 Pfam CID domain 85 194 IPR006569 -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 520 549 - -
Trre14g04263 1003 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 642 695 - -
Trre14g04263 1003 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 56 993 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre14g04263 1003 MobiDBLite consensus disorder prediction 1 77 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 213 228 - -
Trre14g04263 1003 Gene3D - 73 201 IPR008942 -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 25 47 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 615 635 - -
Trre14g04263 1003 MobiDBLite consensus disorder prediction 237 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04263 Trre-Chr14 51137711 51143490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04263 825 991 C2H2 Transcription Factor Family AT4G04885 37.427 9.56e-32 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04263 K14400 - gmx:100788958 1168.3