Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04262 ATGGATATGGAGAGCACACGTAGATCGTTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCGAATCCAACTGCACGACCGTTTTCTCAACGACAAGGTGGTTCTGGTGTTGCTTCGATGTTGTCATCTGGTAGGTTTCCAATGAATGATAGAGACTCCGATAGTAGTGATGGTGGTGGTGGTTATCATCCACAGCCACCGCCGCATCAAGAACTTGTGACTCAGTATAAGGCTGCTCTTGCTGAACTTACTTTCAACTCGAAACCTATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGACTACCCGAGGTATACTGCAATACATACAGGCAGGTTGATCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTTTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCTTCACTCCCGCAGTCAATGGTTCAGCTTCTGCATCTGCCGCCCTTAGAAGTGATTCTCAGTCTCAACGCCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAACGTCTTCAGCAGTCCAGCAGGACTAAGGGAGTATTTAATGATATGAGTGGAGTTATTTCAAACTCAAATGAGGACCCAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTACTCAGAGAGATGCATTTAATGACTCTGTTCCTGACAAGAGCATTGGCGGCGCCTACGGAGACAATGAATACAATTCTAGTCTTTCCAATAATTTGGGCTCAGGTGTTGGAAGAACTGGAAATAGGCTCATTGGCGGTGTTGCAGAGACCTTATCAGGGCAAAGAAGTGGTTTCAGCCTCAAACATGGTTTTTCAAATCATGAAGCACCGAAACCTATGAATTTGGATGCACATAACATCAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTCGTGTGGGATGAGATGAACTCTGGTTTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAGCTCAGACCCGTGGATGGCCGATGATGATAATTTGGAAAGTGAAGATCACCTCCAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATACCCATTGTTAAGAAACAACTACCATCATCCGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTGGCAAATTGAATATGAAGTCAGGTCACTCAGAAATATCTGTTTCTGCTCCTAGTGGCTTACCTAAAAGTTCAAATTCTTTGGCTGCGAAGATGAGGAATCAGTCTTCTATGCCGCATACAACAATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGGGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACAACAGTCTCTATCAGTGCCAGTAACAGCACATCAACCTCCTTCAAGTCAATATATTAGAGATCCCGCACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCACAAGAAAAGGACATGCGGGGTCCATTATCTTCAGCAACTTCTTTCCAGCCAAAACCTCAGCAACGGCAGCTGGCCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAAACCACAGCCACTTCAGAAAAGTCAGCCACAAAGAGTCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCAAACAAATCAATTACCAGAAGTCTGGATGCAAGTAATCGTACAGCTCAATCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTACCACATTAGTTTCTCCGGGTTCTTCAACCGTGTCATTAGGTTCCCCAAATGATTATCCACAGACTTTGCCAAAACTACTTCAAGGGAAGGCTGGAAAAAAGCAAAAGGATTCTAATCAACCCTCTGCTCCCTCTAATGAACGCGGCGCATCAGCTCCGAGCTCAAATGCCGCCAATAAGAATACCTTATATCCAATTTCAAATCTTTTAAGCTCTTTAGTTGCCAAAGGTTTGATATCTGCAGGAGCAGACTCAGCAACTGTATTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGAAAGCATTACTGCCAGTTCCTCTTTGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGGTAAAGTCTTCCAGAGATGAGACGGGTGCTGCTGCAAAAGCCTCGCTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGTTGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAAGAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAGTGGTCCGACTGGAGCATCAAGAGGATGGTATGTTAAGTCAGAGGACTGGATTGCTGGCAAGGCCAAATATCTATCCGAGTCTGAATTTACCGATTCAGCCGATGAATATGATGATAAAATTGCAGAGGACAGTCAATTGGATTCTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTACTGTGTGGAGAGCTATTTGAAGATGTATACTGTCAGGAAAGGGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGCGATAGTGAGATGGAAAGTATAAATTTGGGCCCCATCATTCATGCTAGATGCTTATCCGAGAACTCAATATCTGGTGTGACCAATACAGTAAGGCTCATAGTGTATCGAATGGAATGGATGTCTTCAATTTGA 3051 0.4399 MDMESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGSGVASMLSSGRFPMNDRDSDSSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVDPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASAALRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNDMSGVISNSNEDPERPDRALGAARPWLDPRINMHNNQRTQRDAFNDSVPDKSIGGAYGDNEYNSSLSNNLGSGVGRTGNRLIGGVAETLSGQRSGFSLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGLPDHVPNVSSNLSSDPWMADDDNLESEDHLQITHPIGRKVDKEIPIVKKQLPSSGGHPSLSWELQKQIPSGKLNMKSGHSEISVSAPSGLPKSSNSLAAKMRNQSSMPHTTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVPVTAHQPPSSQYIRDPAPAIGPNVQVGNFRKSQEKDMRGPLSSATSFQPKPQQRQLAPSQAEVTLKAKQPLKSKVSLAKAKTTATSEKSATKSLPAPSVKSGIIPNKSITRSLDASNRTAQSGVKPTRSVGPSPTTLVSPGSSTVSLGSPNDYPQTLPKLLQGKAGKKQKDSNQPSAPSNERGASAPSSNAANKNTLYPISNLLSSLVAKGLISAGADSATVLPSEMVMRSKDQTESITASSSLPVASAPDSAAVPVKSSRDETGAAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVITELLVELPHHCSNCGIRLKEQEQFDRHLEWHATKEREQSGPTGASRGWYVKSEDWIAGKAKYLSESEFTDSADEYDDKIAEDSQLDSMVVADENQCLCVLCGELFEDVYCQERDQWMFKGAVYLNNSDSDSEMESINLGPIIHARCLSENSISGVTNTVRLIVYRMEWMSSI 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04262 1016 MobiDBLite consensus disorder prediction 644 697 - -
Trre14g04262 1016 Gene3D - 75 203 IPR008942 -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 1 79 - -
Trre14g04262 1016 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 1 22 - -
Trre14g04262 1016 SUPERFAMILY ENTH/VHS domain 78 206 IPR008942 -
Trre14g04262 1016 SMART 558neu5 81 203 IPR006569 -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 215 230 - -
Trre14g04262 1016 Pfam CID domain 87 196 IPR006569 -
Trre14g04262 1016 ProSitePatterns Zinc finger C2H2 type domain signature. 855 875 IPR013087 -
Trre14g04262 1016 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 27 49 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 617 637 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 239 264 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 708 735 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 579 603 - -
Trre14g04262 1016 CDD CID_Pcf11 83 195 IPR047415 -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 519 735 - -
Trre14g04262 1016 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 47 995 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre14g04262 1016 MobiDBLite consensus disorder prediction 215 278 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 469 492 - -
Trre14g04262 1016 MobiDBLite consensus disorder prediction 522 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04262 Trre-Chr14 51137705 51143396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04262 827 993 C2H2 Transcription Factor Family AT4G04885 37.427 9.74e-32 131