Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04259 ATGGAGTTTTGGGGTGTTGAGGTTAAAAGCGGAGAATCACTCAAGGTTGAGCCAGAAGATGACAGAATTATCCACCTTTCCTTGGCATGTCTGGGGGATGTCACCAAGGATAAAGGGGGTGAACCAGTTTCCCTGTATGTGAAGATTGATAATCAGAAGCTTCAACTTGGAACTCTTTCTTCAGAAAAAATTCCTCAGATATCTTATGATTTGGTATTTGAGAAGGAATTTGAGCTATCCCATAACTGGAAATATGGAAGCGTCTGCTTTACTGGATTTAAGATGGAATCTGAGCTGGTTTCTGATGATGATGAAGATTCTGATGATTCTATTGAGGAAGATAATCCATTTAATGCTGCTAATGGGAAACCTGAGTTTGAGGTTAAGAATGGTGCCAAACCTGGTGTAAATGAAGCTCAACAAAATAAGACATCAGATCCAAAAAAGAATCAGAAGGATATTGAAAATGATGTTAGTGCTGACGATGAAGAAGATTCATCTGAATCTGGCTCTGATGAGGATTCTAGTGAAGATGAGCCCATGGTGAATGGTCAAATTGAAAGTAGTGAAGATGACGATGATAGTGAAGAGGATGATGAAGATTCTGATGATGAGGAGACACCGAAGAAGATTGAAGGAAGCAATAAGAGGGTTGCTGAATCTTCCAAGAAAACACCTGTAGCTGTGAAGAAAGCAAAATTTGTTACTCCAGAGAAGACTGGTAGCAAGAATGGTGTCCATGTTGATACTCCTTACCCTAAGCAGGCTGGTAAATCAAGTGCAAGTAACAAGCAGCCAGTGAAGCAGCAGACTCCACAGTCAACTGGAGATTACAGCTGTAAACCTTGCAAAAGGACATTTAAGACTGAAGATGCCTTAGGTTCTCATAATAAGGCCAAGCACAGTGCCAAGTGA 915 0.4066 MEFWGVEVKSGESLKVEPEDDRIIHLSLACLGDVTKDKGGEPVSLYVKIDNQKLQLGTLSSEKIPQISYDLVFEKEFELSHNWKYGSVCFTGFKMESELVSDDDEDSDDSIEEDNPFNAANGKPEFEVKNGAKPGVNEAQQNKTSDPKKNQKDIENDVSADDEEDSSESGSDEDSSEDEPMVNGQIESSEDDDDSEEDDEDSDDEETPKKIEGSNKRVAESSKKTPVAVKKAKFVTPEKTGSKNGVHVDTPYPKQAGKSSASNKQPVKQQTPQSTGDYSCKPCKRTFKTEDALGSHNKAKHSAK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04259 304 MobiDBLite consensus disorder prediction 100 283 - -
Trre14g04259 304 MobiDBLite consensus disorder prediction 157 206 - -
Trre14g04259 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
Trre14g04259 304 FunFam Histone deacetylase HDT1 1 98 - -
Trre14g04259 304 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Trre14g04259 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Trre14g04259 304 Pfam C2H2-type zinc finger 278 302 - -
Trre14g04259 304 MobiDBLite consensus disorder prediction 255 280 - -
Trre14g04259 304 Gene3D Nucleoplasmin core domain 1 99 - -
Trre14g04259 304 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04259 Trre-Chr14 51092454 51096715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04259 1 303 C2H2 Transcription Factor Family AT5G03740 43.366 3.81e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04259 NPL 6.7e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04259 - - ccaj:109796568 364.385