Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04245 ATGAATCTGGTCGAGTTGTGTTGTCTCTGCAATACAAAAGCTACAAGTAAACAAGCGCTTCTTCTCCATGCTGAAGGAAAGAAACACGGGGCAAAAGCCCGAGCCTTCCATGCTTCGCATCAGCCACCAGTCCAGACGGATAAACCTGCCCCTGATGCAAAGGATGCCGTGGAGACTGCTTCTAATGGCACGGCAAAAGATGACAAAAATGCAGAGCAACTAAAATTGCAAGAGTCTTCTGAACAAAATAACTTGAAACCAGGGACTTATGACGATGTTTTGAATCAGTCTCTGGTTGATCTTTCAGTGTCTTCTGGTTTGTTTGACAGTAAATCTGTAGCGCGCCGGTTGTTAAAGCAAGGAGGTCTTTACTTGAATAATAGCAGAGTAGATAGTGAAAATAAGAAGATTGAGGCAGCAGATATAGTGGACGGTAGAGTTCTCCTTTTATCTGCTGGAAAAAAGAATAAGGTGCTGGTTTGA 483 0.4327 MNLVELCCLCNTKATSKQALLLHAEGKKHGAKARAFHASHQPPVQTDKPAPDAKDAVETASNGTAKDDKNAEQLKLQESSEQNNLKPGTYDDVLNQSLVDLSVSSGLFDSKSVARRLLKQGGLYLNNSRVDSENKKIEAADIVDGRVLLLSAGKKNKVLV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04245 160 PANTHER TYROSYL-TRNA SYNTHETASE 53 160 IPR024088 GO:0004831
Trre14g04245 160 MobiDBLite consensus disorder prediction 31 89 - -
Trre14g04245 160 FunFam Tyrosine--tRNA ligase 67 160 - -
Trre14g04245 160 CDD S4 98 160 - -
Trre14g04245 160 Pfam S4 domain 103 143 IPR002942 GO:0003723
Trre14g04245 160 Gene3D - 60 160 IPR036986 GO:0003723
Trre14g04245 160 SUPERFAMILY Alpha-L RNA-binding motif 89 160 - -
Trre14g04245 160 ProSiteProfiles S4 RNA-binding domain profile. 96 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04245 Trre-Chr14 50984552 50986226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04245 6 69 C2H2 Transcription Factor Family AT2G19380 42.188 9.48e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04245 K01866 - gmx:100795726 121.709