Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04242 ATGAACACAAAAACACTAGCATTAGCCTTAACCTTGGTATTTCTCTCCACATCATTAACACAAAGTGCACAACAAAATGATACACATGCCCTAACTGAATTCCGTCTCCAGACGGACTTTCACGGCTACCTCGTCAGTAATTGGACTGGCGAGGATGCCTGCAACGCCGCATGGCGCGGCGTTGAATGCTCCCCGAACGGTAGAGTTATAGCTCTCTCTGTCCCTTCCCTCAATCTCCGAGGTCCCGTTGATTCTCTCTCGACGCTAATCTACTTACGCTTCCTTGACCTACACGATAACCGTTTAAACGGAACCATTGTTCCTCTTTTAAACTGCACTGATCTTGAACTACTATATCTTTCAGGCAACGACTTCTCCGGCGAGATACCGCCGGATATTTCATCGTTACGGTTTCTTATCAGACTCGACATCTCCGACAACAATATTCACGGTAAAATTCCGAAAGAAATTTCAAAATTGCATCATCTCCTCACTCTCCGGTTACAGAACAACGAACTCTCCGGTGAAGTTCCCGATCTTTCTTCTTCCCTTAACAATCTCAGAGATCTCAACATCACCAACAATGAACTTCAAGGACACTTACCAGACGCTATGGTTACTAAATTCGGCAACAAAAGCTTCTCCGGCAACGACGGTCTTTGCGGATCGAGTCCGTTACCGAATTGTTCCATCACCGGAACTCCTCATCCTCATCCTCCTTCCGATGATGCTGGTTCTGAAACTGTTCCTTCAAACCCTAGCTCAATCCCAAAATCTAGCAATAGTACTCACGGTATAATTCCATCTGAAACTCCTAGAAAACGGAAAATGTTGAGTCCAGGAGTAATTGTGGCAGTTGCGGTGGCGGCTTCGGTGGTTTTACTGATGGCGGTTTCTTTCACGGTGGCGCAATGTTGCGGAAGAGGAAGATCTAATTCAACGGTTGGGATGGATAGTGAGATTGGGAAGAGAAAAAGTGATAGTAGCAGTGGAAGCGAGAAAAAAGGGTACCGTGGAAATAGTAATAATGGGGGTGTAGATAGAGATAGTGATGGAACAATAACTGAAACAGAGAGAAGTAAATTAGTGTTTTTTGATAGGAGGAATGAGTTTGAGTTAGAGGATTTGTTAAGAGCTTCAGCAGAGATGCTTGGGAAGGGTAGTTTGGGAACTGTTTATAGGGCTATTCTTGATGATGGATGTACTGTTGCTGTTAAGAGACTTAAGGATGCTAACCCTTGTGATAGGAATCAGTTTGAACAATATATGGATGTTGTAGGGAAGCTTAGACACCCTAATGTTGCTAGACTTAAAGCATATTATTATGCTAAGGAAGAAAAGCTTTTGGTTTATGATTATCTTTCCAATGGAAGCTTGCATGCTCTTCTTCATGGGAACCGTGGTCCGGGAAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGGGCAGCAAGAGGCCTAGCAAGGATTCATGGAGAGTATAGTGCAGCCAAGATACCTCATGGGAATGTGAAATCTTCCAATGTATTACTTGACAAGAATGGGGTTGCTTGCATAGGTGACTTTGGTTTGTCACTATTGTTGAACCCTGCTCATGCGGTTGCGAGGCTGGGAGGTTACAGAGCTCCAGAGCAGGCGGAAGCGAAGAAACTCTCGCAAGAGGCAGATGTATATGCTTTTGGGGTTTTGGTATTGGAAGTTTTGACAGGAAGAGCCCCTTCCTCCTCTCAGTATTCTTCTCCTGTAGGAGTTCGCCCTTGTGTGGAATTCGAGGAACAAGTAGCGGATCTTCCAAAATGGGTTCGGTCAATTGTGAAGGAAGAGTGGACATCAGAGGTGTTTGATCAAGAACTTTTGAGGTACAAGAACATTGAAGAGGAGCTTGTTTCAATGCTGAATGTGGGATTAGCTTGTGTTGTGTTACAACCTGAGAAAAGGCCAACTATGTTGCAAGTTGTTAAGATGATTGAGGATATTAGGGTTGAACAATCTCCTCTAAGAGAGGATTATGATGAATCGCGCAATTCACTTTCACCCTCACTTGCAACTACTGAAGATTGCCTAGCTTAA 2079 0.4406 MNTKTLALALTLVFLSTSLTQSAQQNDTHALTEFRLQTDFHGYLVSNWTGEDACNAAWRGVECSPNGRVIALSVPSLNLRGPVDSLSTLIYLRFLDLHDNRLNGTIVPLLNCTDLELLYLSGNDFSGEIPPDISSLRFLIRLDISDNNIHGKIPKEISKLHHLLTLRLQNNELSGEVPDLSSSLNNLRDLNITNNELQGHLPDAMVTKFGNKSFSGNDGLCGSSPLPNCSITGTPHPHPPSDDAGSETVPSNPSSIPKSSNSTHGIIPSETPRKRKMLSPGVIVAVAVAASVVLLMAVSFTVAQCCGRGRSNSTVGMDSEIGKRKSDSSSGSEKKGYRGNSNNGGVDRDSDGTITETERSKLVFFDRRNEFELEDLLRASAEMLGKGSLGTVYRAILDDGCTVAVKRLKDANPCDRNQFEQYMDVVGKLRHPNVARLKAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRISLVLGAARGLARIHGEYSAAKIPHGNVKSSNVLLDKNGVACIGDFGLSLLLNPAHAVARLGGYRAPEQAEAKKLSQEADVYAFGVLVLEVLTGRAPSSSQYSSPVGVRPCVEFEEQVADLPKWVRSIVKEEWTSEVFDQELLRYKNIEEELVSMLNVGLACVVLQPEKRPTMLQVVKMIEDIRVEQSPLREDYDESRNSLSPSLATTEDCLA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04242 692 Gene3D Phosphorylase Kinase; domain 1 349 453 - -
Trre14g04242 692 MobiDBLite consensus disorder prediction 670 692 - -
Trre14g04242 692 SUPERFAMILY Protein kinase-like (PK-like) 382 659 IPR011009 -
Trre14g04242 692 FunFam pollen receptor-like kinase 1 348 453 - -
Trre14g04242 692 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 664 IPR046959 -
Trre14g04242 692 Pfam Protein kinase domain 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04242 692 FunFam Nuclear pore complex protein NUP107 24 179 - -
Trre14g04242 692 Gene3D Ribonuclease Inhibitor 110 231 IPR032675 -
Trre14g04242 692 MobiDBLite consensus disorder prediction 245 268 - -
Trre14g04242 692 ProSiteProfiles Protein kinase domain profile. 378 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04242 692 MobiDBLite consensus disorder prediction 228 273 - -
Trre14g04242 692 MobiDBLite consensus disorder prediction 333 350 - -
Trre14g04242 692 MobiDBLite consensus disorder prediction 313 352 - -
Trre14g04242 692 Gene3D Ribonuclease Inhibitor 23 109 IPR032675 -
Trre14g04242 692 Gene3D Transferase(Phosphotransferase) domain 1 454 683 - -
Trre14g04242 692 SUPERFAMILY L domain-like 25 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04242 Trre-Chr14 50966131 50968837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04242 25 688 Receptor kinase-like Gene Family AT2G36570 63.487 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre14g04242 Pkinase 2.9e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04242 - - gmx:100808402 955.281