Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04231 ATGGATTGGAATATTGAGAACACAAGACCCTTTGTTCCTCATGCAGAATCTTCCTTAAGCTTCTTCTACAACTATAACAATACCCCTTATTCAGGAATGGATGTGAGTCAAGTAGCAATGGGTGAGACACAACAAAGGTTGCTGCTTCCAGAAATGGATGAAATGAACATCAATGGAAATAATTACAAAGAGAAGAAAAAGAGATTAACAAGTAATCAGATTGATTTACTTGAGAGGAGTTTCCAAGAGGAAATAAAATTAGATCCTGAAAGGAAGATAAAGCTTTCAAGAGAGCTAGGGCTTCAACCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAAGCTAAGCACCTTGAACACTTGTATGATGTGCTTAAACAAGAATTTGATATTGTCTCCAAAGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAACAAAGTAATAATTTTAGGACACAACAAACATTTGTTGAAGAAACAGTAGAAAGCACATCAAAAGGTCTAAGATGTTCCAACAAACAACAAGGAGGAACTGTAGAGAATTACACCAACAACAATAGTACTTGTTTCACTGTTGAAGATTTTAATAACCCTGTTTCAATGCCTCCTCAACAATGTCACTGGCCTGTGTTACCTAATTATTATCCCTAA 684 0.3626 MDWNIENTRPFVPHAESSLSFFYNYNNTPYSGMDVSQVAMGETQQRLLLPEMDEMNINGNNYKEKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDIVSKEKQKLQEEVMKLKGKLKEQSNNFRTQQTFVEETVESTSKGLRCSNKQQGGTVENYTNNNSTCFTVEDFNNPVSMPPQQCHWPVLPNYYP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04231 227 Coils Coil 126 160 - -
Trre14g04231 227 FunFam Putative homeobox-leucine zipper protein ATHB-51 62 125 - -
Trre14g04231 227 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 57 185 IPR045224 GO:0003700
Trre14g04231 227 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Trre14g04231 227 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Trre14g04231 227 SMART HOX_1 63 124 IPR001356 GO:0003677
Trre14g04231 227 Gene3D - 57 125 - -
Trre14g04231 227 CDD homeodomain 63 121 IPR001356 GO:0003677
Trre14g04231 227 Pfam Homeodomain 63 118 IPR001356 GO:0003677
Trre14g04231 227 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Trre14g04231 227 Coils Coil 52 72 - -
Trre14g04231 227 SUPERFAMILY Homeodomain-like 52 120 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04231 Trre-Chr14 50860896 50862759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04231 1 150 Homeobox Transcription Factor Family AT5G03790 54.545 7.89e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre14g04231 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04231 - - ccaj:109798071 251.521