Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04230 ATGGGCAATGGCAATGGCAATCAATCTAAGCTGGAACCATCAGTAGTTCACATTTGGATTGACTGTGAGATTGTTAGAAACACGGCGAGTGACCGCAATGTCGAACAAAACTGTGGCGATCCATTCTATAGGCTTCGATGTGATCCTCATTCTCAAAAGCTTTACTTCGACACTCTCAATGGTAGTTCCTATGTTGTAGTTAAAATCATGTCTTCAATCCAGCGCATGGTGTTGCAGTCACCACCTTGGTTACCTAGTTCATGCGTCACACAAGACATGCCGGTAAGCAACGGTATTTGGTTAAATCAGTCACTTCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTCAACTGTTCCCCTCGCCTCTTGGTTTCTCCTCTTAACTGCACTTCTTCTAGTATTTGTCATCGTTACTTGGAAAATTCAGGTCATGTTGACAAAAATCGAGCACTCGAGTGTGCAAATGGTCTTCACCCTTGTTGCACTTTTGTTGCTGGTGGTATGCCTTCAGCTTACAAGATTCGCCTTCACAGTTCCGGTTGCAAAGCATTCAGAAGCATCCTTCATTTGGACCAAGACAAACCTCCTAATCAGTGGGAGGAAGGCCTAGAGATTCAATGGTCTCTTCCATCTGAACCTGTATGCAGGACACAAAGTGAATGTTCGAGAGACTCTAATTGTTCGCCTTCTAGTAGAGAAACACTCTTTCGCTGTCTTTGTAATAGAGGATTCCATTGGGACCCTTTTGCAGCAACCTGTGTAAGGTACAAGAGAAAATCCAAATGGAAAACCAGCTTGGTTGTCTCAATAGTTGTTATTGTTTTTTTCTCATTGGCTGTGGTTCTTGTCATCATCACAAAATCCTTCAAACACAGGGAGAAGCAGGCCAAGGAAAGAGAAATTGTACTGAAATCAAACACTGGTGGAGAGAAACCTTACAAAACTTTTCAACTTAAAGAGTTGAAAAAAGCAACAAAATGTTTTTCTCAAGATAGGATCTTAGGAAGTGGTGGATTTGGAGAAGTTTACAAAGGTGAACTACAAAATGGAACAATTGTAGCTGTCAAGAAAGCTAGAGTTGGTAACCTCAAAAGCACTCAACAAGTGCTTAATGAGGTTTCAATACTTTCTCAAGTCAATCACAAGAACCTAGTCAGACTCTTAGGCTGCTGTGTTGAATCTGAGCAACCTTTGATGATCTATGAATATATCTCAAATGGGACCCTCTATGACCATCTTCATGATAGCTATGGAGTTGTGCTGCTAGAGCTTTTGACTTCACAGAAAGCAATAGACTTTTCTCGTGATCAAGATGATGTTAACTTGGTAATTCATGTGAGTCAATATGCAAACAATGGCGCAATCATGCAAGTCGTCGATCAAAGGCTTCTTCTATCTGTGGAACCCTTAAGTAGTAAATTGATCACAAGCATAAAACTCTTTTGGGAGCTTGCACATGATTGTCTTAGGGAGAAGAAAGTTGAAAGGCCTAGTATGAGGGATATTGTTGAACGCCTCCTATGCATAATTAGGATTGAAGATCAAGAGTGA 1557 0.4098 MGNGNGNQSKLEPSVVHIWIDCEIVRNTASDRNVEQNCGDPFYRLRCDPHSQKLYFDTLNGSSYVVVKIMSSIQRMVLQSPPWLPSSCVTQDMPVSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLENSGHVDKNRALECANGLHPCCTFVAGGMPSAYKIRLHSSGCKAFRSILHLDQDKPPNQWEEGLEIQWSLPSEPVCRTQSECSRDSNCSPSSRETLFRCLCNRGFHWDPFAATCVRYKRKSKWKTSLVVSIVVIVFFSLAVVLVIITKSFKHREKQAKEREIVLKSNTGGEKPYKTFQLKELKKATKCFSQDRILGSGGFGEVYKGELQNGTIVAVKKARVGNLKSTQQVLNEVSILSQVNHKNLVRLLGCCVESEQPLMIYEYISNGTLYDHLHDSYGVVLLELLTSQKAIDFSRDQDDVNLVIHVSQYANNGAIMQVVDQRLLLSVEPLSSKLITSIKLFWELAHDCLREKKVERPSMRDIVERLLCIIRIEDQE 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04230 518 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 418 511 IPR044652 GO:0004672
Trre14g04230 518 Gene3D Phosphorylase Kinase; domain 1 287 401 - -
Trre14g04230 518 ProSitePatterns EGF-like domain signature 2. 240 255 IPR000742 -
Trre14g04230 518 Pfam Protein tyrosine and serine/threonine kinase 332 423 IPR001245 GO:0004672|GO:0006468
Trre14g04230 518 ProSiteProfiles Protein kinase domain profile. 330 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre14g04230 518 SUPERFAMILY Protein kinase-like (PK-like) 315 512 IPR011009 -
Trre14g04230 518 Gene3D Transferase(Phosphotransferase) domain 1 402 518 - -
Trre14g04230 518 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 302 405 - -
Trre14g04230 518 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04230 Trre-Chr14 50848289 50852465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04230 404 518 Receptor kinase-like Gene Family AT5G02070 36.207 3.91e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre14g04230 PK_Tyr_Ser-Thr 2.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04230 - - gmx:100804678 627.861