Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04207 ATGGAGGCTTCCGTCAAGCCAGAATCGGAATCGACCACCGTTTCTCTTGATCAGTTTCACGACGAACGGAAAAATTCTACGGTCAACGGTTGCATTGTTTATACTCGAGTCAAGAGGTCTCTCAATTCTTGTAACAGTTTTTCCGAAGACGTTGATTCCAAGAGATTTAAGGAGAATGCGGAGGTTCCGCTTGAATTGGAGAATGGAATTGATTGCTGCACTGGAGGTAGGGATGGTGGTGAGTGCGGTGATGAGCTGAAGAGTAAGGTTCCGGTGACGACGTTCAGGCGGATTACGAGGTCGGCGATGAAAGCCAAGGTTGAGTCCGGTGAAGAGACTGTGACTGTGTTAGAACAACAAGGTGAAGCCGTTGGAACTGTTAATAAAGATGATGGTAAGGTGCCAGTGAGAATTTTCAAGCGAATTACACGTTCGGCGATGAAAGAAAAAGTCGAGTCCGGTGAGGATAAGGTGTATGTGATAGAACAACAAGGTGCTAATGTTGCACGTGGTAAAGGTAAAGGTAAATGTAGTGGTAAAGGTAATGTGAAAGAAAAGGTTGAGTCTGGGGAGGATAAGGTGAATGTGTTGGAGCAACATGGTGCTGCTGTTGCACGTGGTAAAGGTAATGGGAAGGTGCCTATGAGGGATTTTAAGCGGGTTACACGATTGGCTATGAAAGTAAAGGTTGAGTCTGGTGAGGATAAGGTGACTGAGTTAGAACAGCAGGGTGCTGCAGTTGCAAGTGGTGAAGTTGATAGGACGTTCAAGCGGGTTACGCGATCGGAAGCAATGAAAGCGGGTGAGGAGATGGTGACAGAGTTAAAACAAGATGGTTCTGTGGTTGCCAGTGAAATTGACGGTACATTCCCTGCTTCGAGAAATAAGTTGGAGTTGAAAATGTCGAAAAAGATTGTGGTCAATAAAAAGCCTACAACAGTCAAGGAGCTTTTTCTTACGGGTTTGCTTGATGGTGTCTCTGTGGTTTACATTGGTGGCATTAAGAAGGGTCCAGGATTAAGGGGTGTTATAAGAGATGGGGGAATACTATGTTCATGCTGTCTCTGTAATGGACACAGGGTTATTCCACCTTCCCAATTTGAGATCCATGCTTGCAAACAATATAAGAGAGCAGTAGAGTATATTTGCCTTGAAAATGGTAAGAGTCTGATTGATCTGTTGAGAGCGTGCAGGGGAGCTCCCCTGCATGCTTTGGAGGCAACAATTCAAAACTTTGTTTGTTCAACACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTTCCTTCATGTATGAAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCAAGTAAATCTGAAGAAACTGCCAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTAGACCAGTGTTGGCCTCCAAGTTATCCTGTGCTTCTGAGCTGGCTATCTCTTCAAAAAGTAAGATACACAAGAAGAAAAGAACAAAGTCATCAATAAGGGTCAGCAGCTCAAATTCTTCCAAGAGAGCTTCCGTGCCCATTCTACCCCGGAAGAAAATTATGCCGAAGATGAAAAAGAAGTCATCATCCGTAAAGTTGAAGACCACTTCAAATTCAAATTGTTTATCTCCACAAAATAAGAGTCAATGGAAGATAACTAAGAAGGATCATCGACTGCACAAGTTAGTATTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCCGGAATTGTTTGCAGATGCTGCAACACTGAGATCAGCCCCTCGCAGTTTGAGGTTCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGGGTGTCTCTCCATGAATTATCAATATCTCTCTCAAAAGGCAAAAAATACTCTGCAAATGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCGAGTATTCCACGTGGTGACTGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCATACAATGTCAATGCTTTTGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGTGTTGACTTCAGCAAATCTGGCTTTGGTCCACGCACAATAATATTTTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGGGAGCACAAGATGGCATTTCTAAAGGAATTGCCAAAAGGTAATTGGCTTTGTTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACGTTTTAGTTAGAGGGGATGAGAGACTCCCTGAATCTCTATTGGCTGTTATAAAGAAAAAGCAAGAGGTAAAAGGATTGGATCCCATGAATGATATCGATGTGAAATGGAGGATTCTTAGTGGAAAAAACGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTATCTCTATCTTTCATGAATGCTTTGCTCCTATAGTTGATGCAGCTAGCGGACGTGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTGCGGGGTCAAGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTCGAATCTTTGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCACCATGGGAAGGGCTACTTCCAAACACTCTTTTCCTGCATTGAGAGGTTATTGGCTTTCATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAGTCCATTTGGACAGATAAATTTGGGTTTAGCAAGATTAAACCAGACCAGCTTGCCAACTACAGAAGGAACTGCAATCAGTTTGTGACCTTCCAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCATCCCTGA 3057 0.4272 MEASVKPESESTTVSLDQFHDERKNSTVNGCIVYTRVKRSLNSCNSFSEDVDSKRFKENAEVPLELENGIDCCTGGRDGGECGDELKSKVPVTTFRRITRSAMKAKVESGEETVTVLEQQGEAVGTVNKDDGKVPVRIFKRITRSAMKEKVESGEDKVYVIEQQGANVARGKGKGKCSGKGNVKEKVESGEDKVNVLEQHGAAVARGKGNGKVPMRDFKRVTRLAMKVKVESGEDKVTELEQQGAAVASGEVDRTFKRVTRSEAMKAGEEMVTELKQDGSVVASEIDGTFPASRNKLELKMSKKIVVNKKPTTVKELFLTGLLDGVSVVYIGGIKKGPGLRGVIRDGGILCSCCLCNGHRVIPPSQFEIHACKQYKRAVEYICLENGKSLIDLLRACRGAPLHALEATIQNFVCSTPEEKYFTCKRCKGCFPSCMKRVGPICCSCVESSKSEETAKNVVGKRIRSPRPVLASKLSCASELAISSKSKIHKKKRTKSSIRVSSSNSSKRASVPILPRKKIMPKMKKKSSSVKLKTTSNSNCLSPQNKSQWKITKKDHRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKGKKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVDFSKSGFGPRTIIFCDQCEKEYHVGCLREHKMAFLKELPKGNWLCCNDCTRIHSTLENVLVRGDERLPESLLAVIKKKQEVKGLDPMNDIDVKWRILSGKNASPETRPLLLEAISIFHECFAPIVDAASGRDLIRAMVYGKSVRGQEFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQTLFSCIERLLAFMKVKNLVLPAAEEAQSIWTDKFGFSKIKPDQLANYRRNCNQFVTFQGTNMLHKMVPPCRIINNHP 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04207 1018 SMART PHD_3 652 693 IPR001965 -
Trre14g04207 1018 SMART PHD_3 740 797 IPR001965 -
Trre14g04207 1018 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 639 716 - -
Trre14g04207 1018 MobiDBLite consensus disorder prediction 486 546 - -
Trre14g04207 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 730 IPR013083 -
Trre14g04207 1018 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 896 981 IPR016181 -
Trre14g04207 1018 ProSitePatterns Zinc finger PHD-type signature. 653 692 IPR019786 -
Trre14g04207 1018 ProSiteProfiles Zinc finger PHD-type profile. 650 695 IPR019787 -
Trre14g04207 1018 MobiDBLite consensus disorder prediction 530 546 - -
Trre14g04207 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 737 799 IPR013083 -
Trre14g04207 1018 SUPERFAMILY FYVE/PHD zinc finger 643 698 IPR011011 -
Trre14g04207 1018 Pfam PHD-finger 653 694 IPR019787 -
Trre14g04207 1018 CDD PHD1_AIRE 652 692 - -
Trre14g04207 1018 SUPERFAMILY FYVE/PHD zinc finger 731 794 IPR011011 -
Trre14g04207 1018 PANTHER AUTOIMMUNE REGULATOR 172 1007 - -
Trre14g04207 1018 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 737 799 - -
Trre14g04207 1018 Pfam Tify domain binding domain 342 397 IPR032308 -
Trre14g04207 1018 Pfam Tify domain binding domain 590 634 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04207 Trre-Chr14 50679262 50687389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04207 151 1015 PHD Transcription Factor Family AT2G36720 47.646 0.0 794
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre14g04207 TDBD 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04207 - - cam:101512705 1570.44