Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04206 ATGAGATTCAATAGATACAGAACCCTCTTTTGGCTTTCCGGCTTTGTCATCTTTCTCTTTTCTATCATTATTGTTCATTACACCACACCACTTTCCAACACCTCTAACACTTCCATTAGTAGTTCTCAAAGTATTTTAGGTTTTCAACTTGGCATATTGAGCAAGATTATAAAGCTAAGTGGTGCTCAAGATTTTGTTTCTTTGTTGATAACAAGTATTGCTAGTAGGAGACATCATCATAGGAAGAGTCATAAGGAAAAATGTGATAAGGCCAAATGGGCTTCCAAGCTAATTTTAGACTATAATGCAACCACTGTTTTTACGGTTGATTTAAAGGGTTGTGCTAACTTTACTAGTGTGCAAAAAGCGATTGATGCTGTTCCTGAATCTAGCTCTAATATCACTCGTATCATAATCAATTCTGGTACATACAGAGAGAAGGTAGTGGTCCAAGCCAACAAAACAAACATAATACTACAAGGTCAAGGGTATCTTAATACAATTATAGAATGGAATGACACTGCAAATTCCACTGGCGGAACTTCCTATAGCTACTCATTTGCAGTCTTTGCTTCTAAATTCACAGCTTATAACATTAGCTTTAAGAACACTGCTCCTCCACCATCACCGGGAGAGGTTGGGGCACAGGCCGTGGCACTGAGAGTTACAGGCGATCAAACAACATTCTATGGATGTGGATTTTATGGTGCACAGGACACACTCAATGACGACAATGGGAGACACTATTTTAAAGAATGTTTCATCGAAGGATCCATTGATTTCATATTTGGAAATGCAAGATCGCTTTATGAGGATTGCACTATAAACTCTATAGCAAAACAAGATTTGAATGGCATTGGTGGATCTATCACAGCTCAAGGAAGACAATCTTTGAAGGAACAAACAGGTTTTTCCTTTGTCAATTGCAACATTGTTGGAAGTGGAAAAGTGTGGCTTGGAAGAGCTTGGGGAGCATTTGCCACAGTTGTTTTTTCAACAACAAACATGTCTGATGTTATAGCTGCTGAGGGATGGAATGATTGGAGAGATCCATCCAGAGACCAGAGTGTTTTCTTTGGGGAGTACCATTGTATAGGACTTGGAGCAAATTATACATCTAGAGTCTCTTATGCAAGACAACTCAGGGATTATGAAGCAATCTCATATATAAATATTTCATACATTGATGGGAATGATTGGCTACTTAATTATAATTAG 1218 0.381 MRFNRYRTLFWLSGFVIFLFSIIIVHYTTPLSNTSNTSISSSQSILGFQLGILSKIIKLSGAQDFVSLLITSIASRRHHHRKSHKEKCDKAKWASKLILDYNATTVFTVDLKGCANFTSVQKAIDAVPESSSNITRIIINSGTYREKVVVQANKTNIILQGQGYLNTIIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGEVGAQAVALRVTGDQTTFYGCGFYGAQDTLNDDNGRHYFKECFIEGSIDFIFGNARSLYEDCTINSIAKQDLNGIGGSITAQGRQSLKEQTGFSFVNCNIVGSGKVWLGRAWGAFATVVFSTTNMSDVIAAEGWNDWRDPSRDQSVFFGEYHCIGLGANYTSRVSYARQLRDYEAISYINISYIDGNDWLLNYN 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04206 405 Gene3D - 101 405 IPR012334 -
Trre14g04206 405 FunFam Pectinesterase 101 405 - -
Trre14g04206 405 Pfam Pectinesterase 109 398 IPR000070 GO:0030599|GO:0042545
Trre14g04206 405 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Trre14g04206 405 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 96 401 - -
Trre14g04206 405 SUPERFAMILY Pectin lyase-like 104 401 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04206 Trre-Chr14 50676022 50678233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04206 99 401 Carbohydrate Esterase AT1G05310 56.536 2.21e-122 358