Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04188 ATGCCGATCAGAAACATAGCAGTCGGAACTCCAGCAGAGGCAACTCACCCAGACACTTTGAAAGCTGGTTTGGCTGAGTTAATCTCAACCTTCATCTTCGTCTTCGCTGGTTCCGGTTCCGGTATCGCTTACAACAAGCTTACCGATAACGGTGCCGCCTCTCCCGCCGGTCTTATCTCTGCTTCCATCGCTCATGCATTCGCTCTCTTTGTTGCTGTCTCCGTTGGTGCTAACATCTCCGGTGGACATGTCAACCCCGCCGTCACTTTCGGTGCCTTCGTTGGTGGTAACATCTCCCTCTTCCGTGGTATCGTTTACATCATCGCTCAACTTATCGGATCCGTCCTCGCTTCCTTGCTCCTCGTCTTTGTTACCGCATCGTCTGTTCCAGCATTCGGGCTATCAGAGGGAGTTGGAATTGGACCTGCTTTGGTGTTGGAGATTGTGATGACCTTTGGATTGGTGTACACTGTCTACGCAACAGCCGTTGACCCAAAGAAGGGCAATATTGGAATTATTGCACCTATTGCAATTGGTTTCATCGTTGGTGCTAACATTTTGGTTGGTGGAGCTTTCACCGGAGCATCCATGAACCCAGCTGTGTCATTTGGGCCTGCTGTTGTGAGCTGGAGCTGGTCCAACCACTGGATCTACTGGGCCGGCCCACTTATAGGTGGTGGAATTGCTGGAATTATCTATGAAGTTCTTTTCATTAGCCACACTGGCCATGAACAGCTTCCAACCACTGACTACTAG 756 0.504 MPIRNIAVGTPAEATHPDTLKAGLAELISTFIFVFAGSGSGIAYNKLTDNGAASPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNISLFRGIVYIIAQLIGSVLASLLLVFVTASSVPAFGLSEGVGIGPALVLEIVMTFGLVYTVYATAVDPKKGNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVVSWSWSNHWIYWAGPLIGGGIAGIIYEVLFISHTGHEQLPTTDY 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04188 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 FunFam Probable aquaporin TIP1-1 4 251 - -
Trre14g04188 251 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
Trre14g04188 251 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04188 251 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Trre14g04188 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Trre14g04188 251 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04188 Trre-Chr14 50472470 50473769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04188 1 251 Major Intrinsic Protein MIP AT2G36830 76.984 2.88e-137 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04188 K09873 - gmx:100527509 417.157