Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04183 ATGTTTCAAACACTATGCATTTTGCTAATTATCTTTGTTTTGAGTTCATTTTCACCACTTGGAAAAGCAATGCTGAATTTAACTCTCCCTGGAACACACCCTGATCCTGAAGCTGTTGCTCATGAAGTTCATAGGAAGGTGAATGCTTCAATGGCAAGAAGGGAAATGCTATCTTCTGGATCAGCATGCATGACAGGAAACCCGATCGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAAAGATTAGCAGATTGTGCAATAGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGTGAATATTATGTTGTAACAGATTCCTCAGATGATGATCCTGTTACCCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAACTAAAGCAAGAACTGATTTTTAATAGTTATAAGACCATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAAGTAATGTTATTATACATAACATTCATATTCATCATTGTCATCCCTCAGGAAACACAAACGTGCGATCAAGTCCAGAACACTATGGTTACAGAACAATGTCGGACGGAGACGGAATATCCATCTTCGGTTCAAAAGACATATGGATTGACCATTGCACGCTCTCACGTTGCAAAGACGGACTAATAGACGCAGTAATGGGATCCACGGGAATAACAATATCCAACAACTTCATGTCACACCACAATGAAGTCATGCTCCTCGGACACAGCGATGACTACCTCCCTGACTCAGGAATGCAAGTCACAATCGCATTCAACCATTTCGGTCAGGAGCTCGTTCAGAGGATGCCGCGCTGCAGAAGAGGATACATCCATGTGGTCAACAATGATTTCACTCAATGGGAAATGTATGCCATTGGTGGGAGTGGAGAACCAACTATTAATAGTCAAGGAAATCGTTACGTTGCGCCTGTTAATCTTTTTGCTAAAGAGGTTACCAAGAGAGTTGAAACAGAACAGAATAAATGGAAAGGGTGGAATTGGAGGTCTGAAGGTGATGTTATGATTAATGGTGCATTTTTTGTTACTTCTGGTGAAAGTTTAGAGGTTAAGTATGAGAAGGCTTTTAGTGTTGAACCTCAATCTGCTAATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGTAATGCAAGGGACAATAACCTGGGGATGTGGAGCAGAGGACCAAGTAGCAACGATGGTGGCGCTTTGGATTCTGGCCCGGATTACACAGATGACATGTCGGCCAGTGTGCGAGTGTTGCCGTCTTCTTTTACTATGCTGATGGGCGTCTTATTGTCTTTTAGGGTGATACTGTTGAGGTTTATTCAATGA 1413 0.4168 MFQTLCILLIIFVLSSFSPLGKAMLNLTLPGTHPDPEAVAHEVHRKVNASMARREMLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQELVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYVAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMINGAFFVTSGESLEVKYEKAFSVEPQSANRIVLLTMNSGVLGNARDNNLGMWSRGPSSNDGGALDSGPDYTDDMSASVRVLPSSFTMLMGVLLSFRVILLRFIQ 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04183 470 PANTHER PECTATE LYASE 18-RELATED 30 409 IPR045032 GO:0030570
Trre14g04183 470 Gene3D - 66 408 IPR012334 -
Trre14g04183 470 SMART amb_all 141 338 IPR002022 -
Trre14g04183 470 SUPERFAMILY Pectin lyase-like 67 396 IPR011050 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Trre14g04183 470 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Trre14g04183 470 Pfam Pectate lyase 147 326 IPR002022 -
Trre14g04183 470 FunFam Pectate lyase 66 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04183 Trre-Chr14 50426514 50430470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04183 1 466 Polysaccharide Lyase AT3G53190 71.670 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04183 K01728 - gmx:100775595 798.505