Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04160 ATGGGGAGAGCTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCAAAACTAAAGGATTACATAGAGAAACATGGAACTGGAGGCAATTGGATTACTCTTCCAAAAAGAGTTGGTTTGACAAGGTGTGGAAAAAGCTGTAGACTAAGATGGCTTAATTATCTTAGACCAGACATTAATCATGGTGAATTCTCTGACTCAGAAGATAAAATAATATGCACCCTTTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTAAGTTACAAGGCAGAACTGACAATGATGTAAAGAATTACTGGAACACCAAACTTAAGAAAAAATTTATGTTCATAAATCACTCAATGGAGATGAAATCTCAACAAGTTTCCCTTTTATCCATCCTTCAAAGTTCAACATCAACATCTCCATCATTATCATTCACAGAAAGCAAAAACAGCTCATACTATAATCACTCCAATGGTTCTTTCACAAGTTCCTTTTCCAACTCATCAACCTCATCAAGTCATTTGAGTGGAAACTCTTCTACTTCTGCAGCACAAGAAAGTTTCATTGGTTCATCACAGAAGTGCCAATTCAATGAAAAGTGTGGTGAAAGTGATGCAAAAAAATTTATAGAGCAGAATATTGGTGATGTTAGTTATATCTACAATGAGGTGGAAGATAGTGAGAAATTGTTGTTTTCCAATGTTGGTAGTGTTAATGGATTTTGGGAAGAAAATCCATTGGATTATGTGGTGTAG 768 0.362 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEKHGTGGNWITLPKRVGLTRCGKSCRLRWLNYLRPDINHGEFSDSEDKIICTLFASIGSRWSIIASKLQGRTDNDVKNYWNTKLKKKFMFINHSMEMKSQQVSLLSILQSSTSTSPSLSFTESKNSSYYNHSNGSFTSSFSNSSTSSSHLSGNSSTSAAQESFIGSSQKCQFNEKCGESDAKKFIEQNIGDVSYIYNEVEDSEKLLFSNVGSVNGFWEENPLDYVV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04160 255 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Trre14g04160 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Trre14g04160 255 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Trre14g04160 255 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre14g04160 255 FunFam Transcription factor RAX3 7 68 - -
Trre14g04160 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Trre14g04160 255 Gene3D - 7 68 - -
Trre14g04160 255 CDD SANT 16 62 IPR001005 -
Trre14g04160 255 PANTHER OS09G0431300 PROTEIN 1 206 - -
Trre14g04160 255 Gene3D - 69 135 - -
Trre14g04160 255 SMART sant 13 64 IPR001005 -
Trre14g04160 255 SMART sant 67 115 IPR001005 -
Trre14g04160 255 CDD SANT 70 113 IPR001005 -
Trre14g04160 255 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Trre14g04160 255 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04160 Trre-Chr14 50200540 50202003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04160 1 118 MYB Transcription Factor Family AT2G36890 81.356 7.47e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g04160 Myb_DNA-binding 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04160 K09422 - gmx:778084 278.87