Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04131 ATGAAAGCTCGGAATCTTGTTGCTGATGATGGAAGGGATTCCTATACAAGGCATGGCAAAGTTTTGACTAAAGAATATAAAAATAACACAAGGGTTGATCATCGTGGGGAAAATGGAAAAGGTGACGGAGAAGTTGTATGTCACAAGTGCTTGCATGGAGGAACGCTCTTGTGCTGTTGTGGTAAAGGGTGTAAAAGGAGGTATCACCCGGCTTGTTTGGATCCTCCTCTCAAATCGCTTCCTATAGGGTTTTGGCATTGTAATCGGTGTGTGAAGAAAAAAATAGAGCTCGGGGTGCATTCTGTTTCTGAAGGGGTAGAATCCATATGGGATTCCCGAGAAGTGGTTTCACAAGATGAAGTGGTCCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTCGCTCATGCTCACAACTGTTGGATTCCAGAAAAGCAAATGCTTACTGAGGCTCCAAAGCTTTTGGAAAAATATAAGAAGAAACAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCACCGGTTGCTGCTAAAAAGAAAAATTATCTTGTCAAAGCTAAATGCTCACCCTTTTGATGGAAGTGATGACAATGATTCAGTCTGCCGATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGATGACGCTGTATTTATGACATCATCTAAAGGGATTAAACTCATGGACAATTATGAAAGTCGTCAAAAGAGATCAGATGGGCTGTCAAATCCTCTTGAAGTTAAGGAGGAGAGAGAGGATTCCTTTACCGAATTATCAGAGCTATCATCTGGAGATTCATCAGGATTGTATAACGAGCATTTGAGTTATGTGAACAAGCTTCACATGTGTTGGCACAAAGGTCAGAGTGCCGTTATTGTTGATGAACAAATTGACCAGGAGCGGGTTAGGAAGATGATTTTGTTTATATTATCTTTGAATTGCAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCTACTGGCCTTTCTGCATGGGAAACAGAATTCTTATATTTGGCACCATCTGCCAATCTCGTAGTTTACCAGGGAGAAAAAGATATACGCAGTAGCATCAGATCATTAGAATTTTACAATGAAGATGGTGGTGTTTTATTTCAAATATTGCTCTCATCATCTGAAATTGTCATTGAGGACTTAGATGAACTGCGATGCATTAAATGGGAAGCAATCATAATTGACGAATGCCAGCGGCGACCCAGAATTTTAGGAAACATTGACAATGTCAATATTCTAGCAGCTGAGATAAGGCTCCTTCTCATTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATCAAACTGCTTTCTTTACTTAAGTCTGGGCATGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCATTTAAGTGCAATTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCAGAAGTCTTCCTTCGTTGATGCCCTCCGCGAGCTTACTATCTCAACAAGGAAGTGCTGCAATCATCCTTATCTCCTCGACCCGTCACCGAGTACTTTTGTCACTAGAGGTCGGCCTGTTGAAGAACATTTTGATATTGGAATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAGATTCTTTTTGAAGCTAAACGTCGTGAGCTAAGAGTGATAATATTATTTCAGTCTAGTGGTGGTTCTAGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCATAAATTTGGAAACAACTGCTATGTACGATATGGTCGGGATTACATTCCTTGTATGAATCAAGCTGCTTTGGAAACATTTAACGACAGAGAAAGTGGAAAATTTGTTTTCTTGATTGAGAGCCGTGCTTGTCATCCTAGCATTAAGCTGTCATCTGTGGATATTATTATATCATTTGACAGTGGTTTGGACCTGCAAAATGACCTCAAATGCATACAAAAAATGTCTATCAGCTCAAAGTTCAAAAAGATAACAGTTTTGAGATTGTACTCATGCTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGCGTATAGCTCTTGTATCCAATAAACGAAAGAAAGAGGGTGCTCTTGACAACAATATGCGGTTAGTTAACCAGAGTACACATCACACCCTGCTAAAATGGGGGACCTCTTATCTGTTCAGTATGCTTGATGACTTACATGGAAGTGGCACCTCAGTCTCTGCTTCAGACATCTCCAATCAGTCAATTCTAAATGATGTAATCTGTGAATTATCATCCAAATTGGTTTGTGATAGCGGTGGCACTGATTCTCATAGACAGTCATTCATATCGAGAGTAGAACAGAATGGAGAGGAATATGTATGGAACATTTCATTGCCAGGAGAAAGAGAAATGAAGAAATTGGGCAAGAAAACACATACTTTTTCCTGGAGTGATCTCCTCAAAGGAAGGAATCCTCGCTGGAAGTTTTTACCTGCTTCGTCTCAAAGGAACAGAAAAACAGTTGAATATGTTCATCACACAGTAAAAGGATCAGAAAATGAAAATGATGCCATTATAAGAAAGAAAAGGACAAAGTCCACGGATAGTATTTATCCCATAGGAAAGAACGCATCCAAGGATAATGTAGATCCCGAGGTAAGGAAAATCACCAAGGATAATGTTGACCCCAAACGAAGGAAGGTGTCCAAGGAAATTATTGATTCCAAGGGAAGGAACGTGTCTACGGATGTTGTTGATTCCAAACATCTGAAAAAAAAGTGGAAGAATAAGAAGAGTGGAAGTGCTGATAAAAGCAAAAGCAAAAGCAAATTGAATGGTAATAGGATTGGGTTTTATAACAAATTTGACTCCATAACACATCCTTTGACCAATGAAATGACAGGAGCAGCTGCAATAACTAAACAAATTCCAAAACAAAAGAAACTGCCGGACATGCCCAAGAGCAACAAACTCCTGTCAAAGCCTGATATATCTATATCATGTCTCTGTGATGTTCTACACTTTTCGAAAAATGACAAGGTTGTCACCATGAAGATTCTTGAGTATGTATTTGAACATTACGACATTGATTGCCTGGAAGATTCTACAGTGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACACAAGATTGATAGGAAACATTCACTTGATCTTGCAAAAAGGCACTTGAATTTCAATTGCACGGAGGAAGAAGCCACCGATGTTTACAATTCACTGCAAGAGTGTAAGGAACACATTTCAAGATGTTTACAAAATGAACTTTGTGTTGAGGAAAATAATATAAATGGTGCTTCAAGCTCCATGACACCTGAGCTGCAACATTCGGCAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCAAGTGTTTCAAATCTTGTGAAATCTGCCACAAATGAACCCGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAACTTCCAGAACGAACCTTATATGGCTCAAGAAATTTCTACATCTCAAACGACCCCTGGTAGTATGCCTGTGGAAGCAGATGCCACTTCCATGGAATCTGATGCAGATGTGGGAATAAATGCTTTGAACTCGGTAGCAGCTGAAGTTTCACACCTCGAGCACCGGAATATTTCCCCCAATTCAAGTAATGATTTCAATAATGTCAATCCTGTAACAGGTTCTTTGGAAAGACAGAGTCCCATTTTAGGTTCAGATATTACACAATCTGATATGAGAGTTTTTGAAGATCCTCAAACTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATATCAACTTATCTTGCACAACTTCACAATGTTGAGACAGATACTGTAACTTGTGATAGAACTGCTGTTCCCGAGGTCAGACAATGGTGCAATATAGTGAGTCCTGTATGTGGTGAGTCAACCACTTCAGAGTTTGCTGAGTGTCCTTTACCATATAGGCAACTATCACATGCAAATTTAATGCCATTGCGACAGTCATTGTCGGCTAGTCCATCTTTTATGGAGGACTTATCTCGTACAGTCATGCCACTGGACAGAGTTTCAAATCATAATTGTCTTCGTCGTGAGTCTGTAGAAATATTGCAAGCACTGTATGAACCCGTGGAACTGGTTGACTCTTCACCTGTGACATTAGAACCCTCCAGTTATGCGCCCGGGAATGAAAATGCTTCTCATGATCCTCACAACATTACTATTCCTGGATATATGAACAGTGATCCTTTTCAAGCTCATTATTTGACATCTCAAATGTCCTATGTTGCCGATCCAAACCCATTACTATTTGAAATGGAGCGAATACAAAAAATGAATGAAGAAGCTGTCAAGACCTATGAGGAAAAAAAATTGCAGCTGCAGTCTGACTACGAAAAGGAGGTTGAAATGTTACGTGCAAAACACTATATGTTGCTTCAGAATGTCGATACTGCAGCAGCATTAATGAAAAATGAACTTGAGGCACAGAGAGATATCGTATTCAGGAATATGATATTAGCTGATGTTTGGAGCCGAACTGATAGTATTTGCTAA 4659 0.3943 MKARNLVADDGRDSYTRHGKVLTKEYKNNTRVDHRGENGKGDGEVVCHKCLHGGTLLCCCGKGCKRRYHPACLDPPLKSLPIGFWHCNRCVKKKIELGVHSVSEGVESIWDSREVVSQDEVVQREYFVKYQGLAHAHNCWIPEKQMLTEAPKLLEKYKKKQQVVRWKKDWSIPHRLLLKRKIILSKLNAHPFDGSDDNDSVCRYEWLVKWTGLGYDHVTWELDDAVFMTSSKGIKLMDNYESRQKRSDGLSNPLEVKEEREDSFTELSELSSGDSSGLYNEHLSYVNKLHMCWHKGQSAVIVDEQIDQERVRKMILFILSLNCNVKRPFLIISTSTGLSAWETEFLYLAPSANLVVYQGEKDIRSSIRSLEFYNEDGGVLFQILLSSSEIVIEDLDELRCIKWEAIIIDECQRRPRILGNIDNVNILAAEIRLLLISGQIKEDRADYIKLLSLLKSGHDELHFSSASISNLKSQLEQYIAFKCNSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLSLCSGQKSSFVDALRELTISTRKCCNHPYLLDPSPSTFVTRGRPVEEHFDIGIKASGKLLLLEKILFEAKRRELRVIILFQSSGGSRSIGDILDDVLCHKFGNNCYVRYGRDYIPCMNQAALETFNDRESGKFVFLIESRACHPSIKLSSVDIIISFDSGLDLQNDLKCIQKMSISSKFKKITVLRLYSCFTVEEKVLMLAKERIALVSNKRKKEGALDNNMRLVNQSTHHTLLKWGTSYLFSMLDDLHGSGTSVSASDISNQSILNDVICELSSKLVCDSGGTDSHRQSFISRVEQNGEEYVWNISLPGEREMKKLGKKTHTFSWSDLLKGRNPRWKFLPASSQRNRKTVEYVHHTVKGSENENDAIIRKKRTKSTDSIYPIGKNASKDNVDPEVRKITKDNVDPKRRKVSKEIIDSKGRNVSTDVVDSKHLKKKWKNKKSGSADKSKSKSKLNGNRIGFYNKFDSITHPLTNEMTGAAAITKQIPKQKKLPDMPKSNKLLSKPDISISCLCDVLHFSKNDKVVTMKILEYVFEHYDIDCLEDSTVQAFEISVCWLAASLLKHKIDRKHSLDLAKRHLNFNCTEEEATDVYNSLQECKEHISRCLQNELCVEENNINGASSSMTPELQHSAEEEKQKGFQHPSVSNLVKSATNEPDLPRKSPTTVLFSQDQIYTENFQNEPYMAQEISTSQTTPGSMPVEADATSMESDADVGINALNSVAAEVSHLEHRNISPNSSNDFNNVNPVTGSLERQSPILGSDITQSDMRVFEDPQTLMNQVIDIDNSMNISTYLAQLHNVETDTVTCDRTAVPEVRQWCNIVSPVCGESTTSEFAECPLPYRQLSHANLMPLRQSLSASPSFMEDLSRTVMPLDRVSNHNCLRRESVEILQALYEPVELVDSSPVTLEPSSYAPGNENASHDPHNITIPGYMNSDPFQAHYLTSQMSYVADPNPLLFEMERIQKMNEEAVKTYEEKKLQLQSDYEKEVEMLRAKHYMLLQNVDTAAALMKNELEAQRDIVFRNMILADVWSRTDSIC 1552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04131 1552 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 103 1327 - -
Trre14g04131 1552 MobiDBLite consensus disorder prediction 916 968 - -
Trre14g04131 1552 Gene3D - 185 269 - -
Trre14g04131 1552 SUPERFAMILY Chromo domain-like 65 161 IPR016197 -
Trre14g04131 1552 SMART chromo_7 103 162 IPR000953 -
Trre14g04131 1552 SMART chromo_7 169 245 IPR000953 -
Trre14g04131 1552 SMART PHD_3 46 91 IPR001965 -
Trre14g04131 1552 Gene3D - 105 163 - -
Trre14g04131 1552 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 160 IPR023780 -
Trre14g04131 1552 ProSiteProfiles Zinc finger PHD-type profile. 44 93 IPR019787 -
Trre14g04131 1552 ProSitePatterns Zinc finger PHD-type signature. 47 90 IPR019786 -
Trre14g04131 1552 MobiDBLite consensus disorder prediction 916 949 - -
Trre14g04131 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 740 IPR027417 -
Trre14g04131 1552 SUPERFAMILY Chromo domain-like 198 244 IPR016197 -
Trre14g04131 1552 Gene3D - 491 723 IPR027417 -
Trre14g04131 1552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 457 IPR027417 -
Trre14g04131 1552 ProSiteProfiles Chromo and chromo shadow domain profile. 104 169 IPR000953 -
Trre14g04131 1552 MobiDBLite consensus disorder prediction 1137 1158 - -
Trre14g04131 1552 ProSiteProfiles Chromo and chromo shadow domain profile. 177 252 IPR000953 -
Trre14g04131 1552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 100 IPR013083 -
Trre14g04131 1552 Coils Coil 1474 1494 - -
Trre14g04131 1552 Gene3D - 278 490 IPR038718 -
Trre14g04131 1552 Gene3D - 1467 1547 - -
Trre14g04131 1552 CDD CD_CSD 106 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04131 Trre-Chr14 49905147 49917507 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g04131 SNF2_N 3.2e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04131 - K11643 gmx:100813574 1568.9