Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04130 ATGAAAGCTCGGAATCTTGTTGCTGATGATGGAAGGGATTCCTATACAAGGCATGGCAAAGTTTTGACTAAAGAATATAAAAATAACACAAGGGTTGATCATCGTGGGGAAAATGGAAAAGGTGACGGAGAAGTTGTATGTCACAAGTGCTTGCATGGAGGAACGCTCTTGTGCTGTTGTGGTAAAGGGTGTAAAAGGAGGTATCACCCGGCTTGTTTGGATCCTCCTCTCAAATCGCTTCCTATAGGGTTTTGGCATTGTAATCGGTGTGTGAAGAAAAAAATAGAGCTCGGGGTGCATTCTGTTTCTGAAGGGGTAGAATCCATATGGGATTCCCGAGAAGTGGTTTCACAAGATGAAGTGGTCCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTCGCTCATGCTCACAACTGTTGGATTCCAGAAAAGCAAATGCTTACTGAGGCTCCAAAGCTTTTGGAAAAATATAAGAAGAAACAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCACCGGTTGCTGCTAAAAAGAAAAATTATCTTGTCAAAGCTAAATGCTCACCCTTTTGATGGAAGTGATGACAATGATTCAGTCTGCCGATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGATGACGCTGTATTTATGACATCATCTAAAGGGATTAAACTCATGGACAATTATGAAAGTCGTCAAAAGAGATCAGATGGGCTGTCAAATCCTCTTGAAGTTAAGGAGGAGAGAGAGGATTCCTTTACCGAATTATCAGAGCTATCATCTGGAGATTCATCAGGATTGTATAACGAGCATTTGAGTTATGTGAACAAGCTTCACATGTGTTGGCACAAAGGTCAGAGTGCCGTTATTGTTGATGAACAAATTGACCAGGAGCGGGTTAGGAAGATGATTTTGTTTATATTATCTTTGAATTGCAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCTACTGGCCTTTCTGCATGGGAAACAGAATTCTTATATTTGGCACCATCTGCCAATCTCGTAGTTTACCAGGGAGAAAAAGATATACGCAGTAGCATCAGATCATTAGAATTTTACAATGAAGATGGTGGTGTTTTATTTCAAATATTGCTCTCATCATCTGAAATTGTCATTGAGGACTTAGATGAACTGCGATGCATTAAATGGGAAGCAATCATAATTGACGAATGCCAGCGGCGACCCAGAATTTTAGGAAACATTGACAATGTCAATATTCTAGCAGCTGAGATAAGGCTCCTTCTCATTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATCAAACTGCTTTCTTTACTTAAGTCTGGGCATGATGAGTTACATTTCTCATCTGCAAGCATCTCCAATTTGAAGAGTCAATTGGAACAATATATTGCATTTAAGTGCAATTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCAGAAGTCTTCCTTCGTTGATGCCCTCCGCGAGCTTACTATCTCAACAAGGAAGTGCTGCAATCATCCTTATCTCCTCGACCCGTCACCGAGTACTTTTGTCACTAGAGGTCGGCCTGTTGAAGAACATTTTGATATTGGAATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAGATTCTTTTTGAAGCTAAACGTCGTGAGCTAAGAGTGATAATATTATTTCAGTCTAGTGGTGGTTCTAGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCATAAATTTGGAAACAACTGCTATGTACGATATGGTCGGGATTACATTCCTTGTATGAATCAAGCTGCTTTGGAAACATTTAACGACAGAGAAAGTGGAAAATTTGTTTTCTTGATTGAGAGCCGTGCTTGTCATCCTAGCATTAAGCTGTCATCTGTGGATATTATTATATCATTTGACAGTGGTTTGGACCTGCAAAATGACCTCAAATGCATACAAAAAATGTCTATCAGCTCAAAGTTCAAAAAGATAACAGTTTTGAGATTGTACTCATGCTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGCGTATAGCTCTTGTATCCAATAAACGAAAGAAAGAGGGTGCTCTTGACAACAATATGCGGTTAGTTAACCAGAGTACACATCACACCCTGCTAAAATGGGGGACCTCTTATCTGTTCAGTATGCTTGATGACTTACATGGAAGTGGCACCTCAGTCTCTGCTTCAGACATCTCCAATCAGTCAATTCTAAATGATGTAATCTGTGAATTATCATCCAAATTGGTTTGTGATAGCGGTGGCACTGATTCTCATAGACAGTCATTCATATCGAGAGTAGAACAGAATGGAGAGGAATATGTATGGAACATTTCATTGCCAGGAGAAAGAGAAATGAAGAAATTGGGCAAGAAAACACATACTTTTTCCTGGAGTGATCTCCTCAAAGGAAGGAATCCTCGCTGGAAGTTTTTACCTGCTTCGTCTCAAAGGAACAGAAAAACAGTTGAATATGTTCATCACACAGTAAAAGGATCAGAAAATGAAAATGATGCCATTATAAGAAAGAAAAGGACAAAGTCCACGGATAGTATTTATCCCATAGGAAAGAACGCATCCAAGGATAATGTAGATCCCGAGGTAAGGAAAATCACCAAGGATAATGTTGACCCCAAACGAAGGAAGGTGTCCAAGGAAATTATTGATTCCAAGGGAAGGAACGTGTCTACGGATGTTGTTGATTCCAAACATCTGAAAAAAAAGTGGAAGAATAAGAAGAGTGGAAGTGCTGATAAAAGCAAAAGCAAAAGCAAATTGAATGGAGCAGCTGCAATAACTAAACAAATTCCAAAACAAAAGAAACTGCCGGACATGCCCAAGAGCAACAAACTCCTGTCAAAGCCTGATATATCTATATCATGTCTCTGTGATGTTCTACACTTTTCGAAAAATGACAAGGTTGTCACCATGAAGATTCTTGAGTATGTATTTGAACATTACGACATTGATTGCCTGGAAGATTCTACAGTGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACACAAGATTGATAGGAAACATTCACTTGATCTTGCAAAAAGGCACTTGAATTTCAATTGCACGGAGGAAGAAGCCACCGATGTTTACAATTCACTGCAAGAGTGTAAGGAACACATTTCAAGATGTTTACAAAATGAACTTTGTGTTGAGGAAAATAATATAAATGGTGCTTCAAGCTCCATGACACCTGAGCTGCAACATTCGGCAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCAAGTGTTTCAAATCTTGTGAAATCTGCCACAAATGAACCCGATCTTCCAAGAAAATCTCCCACAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAACTTCCAGAACGAACCTTATATGGCTCAAGAAATTTCTACATCTCAAACGACCCCTGGTAGTATGCCTGTGGAAGCAGATGCCACTTCCATGGAATCTGATGCAGATGTGGGAATAAATGCTTTGAACTCGGTAGCAGCTGAAGTTTCACACCTCGAGCACCGGAATATTTCCCCCAATTCAAGTAATGATTTCAATAATGTCAATCCTGTAACAGGTTCTTTGGAAAGACAGAGTCCCATTTTAGGTTCAGATATTACACAATCTGATATGAGAGTTTTTGAAGATCCTCAAACTTTAATGAATCAAGTGATTGACATTGACAATTCTATGAATATATCAACTTATCTTGCACAACTTCACAATGTTGAGACAGATACTGTAACTTGTGATAGAACTGCTGTTCCCGAGGTCAGACAATGGTGCAATATAGTGAGTCCTGTATGTGGTGAGTCAACCACTTCAGAGTTTGCTGAGTGTCCTTTACCATATAGGCAACTATCACATGCAAATTTAATGCCATTGCGACAGTCATTGTCGGCTAGTCCATCTTTTATGGAGGACTTATCTCGTACAGTCATGCCACTGGACAGAGTTTCAAATCATAATTGTCTTCGTCGTGAGTCTGTAGAAATATTGCAAGCACTGTATGAACCCGTGGAACTGGTTGACTCTTCACCTGTGACATTAGAACCCTCCAGTTATGCGCCCGGGAATGAAAATGCTTCTCATGATCCTCACAACATTACTATTCCTGGATATATGAACAGTGATCCTTTTCAAGCTCATTATTTGACATCTCAAATGTCCTATGTTGCCGATCCAAACCCATTACTATTTGAAATGGAGCGAATACAAAAAATGAATGAAGAAGCTGTCAAGACCTATGAGGAAAAAAAATTGCAGCTGCAGTCTGACTACGAAAAGGAGGTTGAAATGTTACGTGCAAAACACTATATGTTGCTTCAGAATGTCGATACTGCAGCAGCATTAATGAAAAATGAACTTGAGGCACAGAGAGATATCGTATTCAGGAATATGATATTAGCTGATGTTTGGAGCCGAACTGATAGTATTTGCTAA 4593 0.3952 MKARNLVADDGRDSYTRHGKVLTKEYKNNTRVDHRGENGKGDGEVVCHKCLHGGTLLCCCGKGCKRRYHPACLDPPLKSLPIGFWHCNRCVKKKIELGVHSVSEGVESIWDSREVVSQDEVVQREYFVKYQGLAHAHNCWIPEKQMLTEAPKLLEKYKKKQQVVRWKKDWSIPHRLLLKRKIILSKLNAHPFDGSDDNDSVCRYEWLVKWTGLGYDHVTWELDDAVFMTSSKGIKLMDNYESRQKRSDGLSNPLEVKEEREDSFTELSELSSGDSSGLYNEHLSYVNKLHMCWHKGQSAVIVDEQIDQERVRKMILFILSLNCNVKRPFLIISTSTGLSAWETEFLYLAPSANLVVYQGEKDIRSSIRSLEFYNEDGGVLFQILLSSSEIVIEDLDELRCIKWEAIIIDECQRRPRILGNIDNVNILAAEIRLLLISGQIKEDRADYIKLLSLLKSGHDELHFSSASISNLKSQLEQYIAFKCNSDSSRFIEYWVPAQLSSLQLEQYCSMLLSNSLSLCSGQKSSFVDALRELTISTRKCCNHPYLLDPSPSTFVTRGRPVEEHFDIGIKASGKLLLLEKILFEAKRRELRVIILFQSSGGSRSIGDILDDVLCHKFGNNCYVRYGRDYIPCMNQAALETFNDRESGKFVFLIESRACHPSIKLSSVDIIISFDSGLDLQNDLKCIQKMSISSKFKKITVLRLYSCFTVEEKVLMLAKERIALVSNKRKKEGALDNNMRLVNQSTHHTLLKWGTSYLFSMLDDLHGSGTSVSASDISNQSILNDVICELSSKLVCDSGGTDSHRQSFISRVEQNGEEYVWNISLPGEREMKKLGKKTHTFSWSDLLKGRNPRWKFLPASSQRNRKTVEYVHHTVKGSENENDAIIRKKRTKSTDSIYPIGKNASKDNVDPEVRKITKDNVDPKRRKVSKEIIDSKGRNVSTDVVDSKHLKKKWKNKKSGSADKSKSKSKLNGAAAITKQIPKQKKLPDMPKSNKLLSKPDISISCLCDVLHFSKNDKVVTMKILEYVFEHYDIDCLEDSTVQAFEISVCWLAASLLKHKIDRKHSLDLAKRHLNFNCTEEEATDVYNSLQECKEHISRCLQNELCVEENNINGASSSMTPELQHSAEEEKQKGFQHPSVSNLVKSATNEPDLPRKSPTTVLFSQDQIYTENFQNEPYMAQEISTSQTTPGSMPVEADATSMESDADVGINALNSVAAEVSHLEHRNISPNSSNDFNNVNPVTGSLERQSPILGSDITQSDMRVFEDPQTLMNQVIDIDNSMNISTYLAQLHNVETDTVTCDRTAVPEVRQWCNIVSPVCGESTTSEFAECPLPYRQLSHANLMPLRQSLSASPSFMEDLSRTVMPLDRVSNHNCLRRESVEILQALYEPVELVDSSPVTLEPSSYAPGNENASHDPHNITIPGYMNSDPFQAHYLTSQMSYVADPNPLLFEMERIQKMNEEAVKTYEEKKLQLQSDYEKEVEMLRAKHYMLLQNVDTAAALMKNELEAQRDIVFRNMILADVWSRTDSIC 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04130 1530 SUPERFAMILY Chromo domain-like 65 161 IPR016197 -
Trre14g04130 1530 Gene3D - 278 490 IPR038718 -
Trre14g04130 1530 SMART chromo_7 103 162 IPR000953 -
Trre14g04130 1530 SMART chromo_7 169 245 IPR000953 -
Trre14g04130 1530 SMART PHD_3 46 91 IPR001965 -
Trre14g04130 1530 Gene3D - 1445 1525 - -
Trre14g04130 1530 MobiDBLite consensus disorder prediction 1115 1136 - -
Trre14g04130 1530 ProSiteProfiles Zinc finger PHD-type profile. 44 93 IPR019787 -
Trre14g04130 1530 ProSitePatterns Zinc finger PHD-type signature. 47 90 IPR019786 -
Trre14g04130 1530 SUPERFAMILY Chromo domain-like 198 244 IPR016197 -
Trre14g04130 1530 Coils Coil 1452 1472 - -
Trre14g04130 1530 Gene3D - 185 269 - -
Trre14g04130 1530 Gene3D - 491 723 IPR027417 -
Trre14g04130 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 457 IPR027417 -
Trre14g04130 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 740 IPR027417 -
Trre14g04130 1530 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 160 IPR023780 -
Trre14g04130 1530 ProSiteProfiles Chromo and chromo shadow domain profile. 104 169 IPR000953 -
Trre14g04130 1530 MobiDBLite consensus disorder prediction 895 972 - -
Trre14g04130 1530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 100 IPR013083 -
Trre14g04130 1530 ProSiteProfiles Chromo and chromo shadow domain profile. 177 252 IPR000953 -
Trre14g04130 1530 MobiDBLite consensus disorder prediction 906 949 - -
Trre14g04130 1530 Gene3D - 105 163 - -
Trre14g04130 1530 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 103 1305 - -
Trre14g04130 1530 CDD CD_CSD 106 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04130 Trre-Chr14 49905147 49917507 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre14g04130 SNF2_N 3.2e-06 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04130 - K11643 gmx:100813574 1548.49