Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04123 ATGAGAGATTTGAACAGGGATGTGGATCCTCAGCTATGGCATGCCATTGCTGGAGGAATGGTACAAATGCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCACGCCGAGCATGCATGTGAGCTAGTGAATTTCAGCGCTCATTCCATAATTCCGCATAAAATCCCATCTTTAATTCCATGCAGAGTTGAATCTATCAAATATATGGCTGATCCTGAGACAGATGAGGTGTTTGCAAAACTCCGGTTTGTTCCTCTCCATATTAGCCAGGTTCGTTTTGATGACGATGATGATGGTGTTGGTGGTATCGGCGTGTCTGGAACTAAGGATAAACATCAATGTTTTGCGAAAACGTTGACACAATCTGATTCAAACAATGGTGGTGGATTTTCTTGTCCTAGATACTGTGCTGAAACACTTTTTCCTAATTTAGACTATTCAGGTAACCCTCCTTCTCAGGACATTTATCCCAAAGACGTTCATGGCGAAACGTGGCCTTTCAAACACGTTTATAGAGGTACGCCGAGGCGGCATCTGTTGACAACTGGGTGGAGTCCTTTTGTTAGTGACAAGAAAATTGTTTCCGGGGATTCAATTGTGTTTGTGAAAACTGAAAACGGTGATCTTCATGTCGGACTTCGGAGGGCTAAAAGGAAAAGGGATGTTGCACCTGAGCCTTCGTCAGGGATGAAACGTGGCAGTGGAATTGGAATTCGTCCTGATTTACCTTACGGCGTATTTACATCGTATTCGGGAGAGGAAGATAATAAAATTCGAAGAAATGGGAAAGGAAATGGATTGAGAATAAGTGATGGGATGATGGGTAGGGGGAAAGTAAAAGCTCAAGAAGTTATTGAAGCGGTAAAACGTGGTATCAATATGGAGCCGTTTGATGTGGTTTACTATCCTCGAGCAGGTACTCCCGAGTTCTTTGTGAAAATTTCTTTAATTGCAAAAGCACTTCAGATTAGGTGGTGTCATGGAATGAGATTCAAGATGGCCATTGAAACTGAGGACTCGACGAGGATAAGTTGGTTTGTCGGAACTGTTGTTTCTGTTCAAGCTTCTGATCCAGCATGGCCTGAATCTTTTTGGAGATTTCTCCAGGTTGAATGGGATGAACCGGAGTTACTTAAAAATGTGAAAAGGGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCCCCTTACGTACCACCAAGGAAGAAATTGAGATTGCCTCAACACCCAAATTATCCCCTTGATGGCCAATTTTCAATGCCAACTTTTCCGAACAATTTTCTAAGTCCCAATATTCCAATTTTTCACTTACCCGAAACTATTCCTGTCGGCATGCAGGGAGCCAGGCATCCTCATTTCGGTTTTTCCTCACCAGACTTTCACCTCAATAAATTTCCATTAGGTCTCTTTAAGCCTAGTTTCCATCAACCGTTTAATCATACTGCTACAACATCGATGACAGTCCCTTATAACTCAGTTTTGCAAAAGCCAGCCACAAGTGATAATGCTTCGTGCTCGCTATCGATATCAACTTCTACACAATCATCAGAGAAATCAGACCATGCGAAGCCCTCGCATCTCATGCTTTTTGGCCAAAAAATTACAATCGAGAACAAAACTTCTTCGGATACAACTGCAGATGCTGGAAATGAAAATATCGAGAAGAATATAACTAATAACTTTTCTGATCTTCATCTACAAGGCTTGCCGAAATGTTCCTCTGGTGATCGGTTCGAGTTGAATCCTAAGAATTAA 1779 0.4205 MRDLNRDVDPQLWHAIAGGMVQMPEVNSKIFYFPQGHAEHACELVNFSAHSIIPHKIPSLIPCRVESIKYMADPETDEVFAKLRFVPLHISQVRFDDDDDGVGGIGVSGTKDKHQCFAKTLTQSDSNNGGGFSCPRYCAETLFPNLDYSGNPPSQDIYPKDVHGETWPFKHVYRGTPRRHLLTTGWSPFVSDKKIVSGDSIVFVKTENGDLHVGLRRAKRKRDVAPEPSSGMKRGSGIGIRPDLPYGVFTSYSGEEDNKIRRNGKGNGLRISDGMMGRGKVKAQEVIEAVKRGINMEPFDVVYYPRAGTPEFFVKISLIAKALQIRWCHGMRFKMAIETEDSTRISWFVGTVVSVQASDPAWPESFWRFLQVEWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPYVPPRKKLRLPQHPNYPLDGQFSMPTFPNNFLSPNIPIFHLPETIPVGMQGARHPHFGFSSPDFHLNKFPLGLFKPSFHQPFNHTATTSMTVPYNSVLQKPATSDNASCSLSISTSTQSSEKSDHAKPSHLMLFGQKITIENKTSSDTTADAGNENIEKNITNNFSDLHLQGLPKCSSGDRFELNPKN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04123 592 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Trre14g04123 592 SUPERFAMILY DNA-binding pseudobarrel domain 112 220 IPR015300 -
Trre14g04123 592 CDD B3_DNA 116 217 IPR003340 GO:0003677
Trre14g04123 592 Gene3D - 326 399 - -
Trre14g04123 592 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 568 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre14g04123 592 MobiDBLite consensus disorder prediction 508 532 - -
Trre14g04123 592 FunFam Auxin response factor 115 219 - -
Trre14g04123 592 FunFam Auxin response factor 327 399 - -
Trre14g04123 592 Gene3D - 115 219 IPR015300 -
Trre14g04123 592 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Trre14g04123 592 SMART B3_2 117 219 IPR003340 GO:0003677
Trre14g04123 592 Pfam Auxin response factor 295 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre14g04123 592 MobiDBLite consensus disorder prediction 508 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04123 Trre-Chr14 49721872 49723799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04123 6 563 B3 DNA Binding Superfamily AT4G30080 49.212 7.00e-174 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre14g04123 B3 1.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04123 - - psat:127130059 779.63