Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04122 ATGAAAGCAAAAAGAAAAGGTGGCAATCTATCTCTAACTGAGATGAATAAGGAGTCAAAGACGAAAATGAGAGATTTGAACAGGGATGTGGATCCTCAGCTATGGCATGCCATTGCTGGAGGAATGGTACAAATGCCAGAAGTTAACTCTAAGATCTTCTACTTCCCTCAAGGTCACGCCGAGCATGCATGTGAGCTAGTGAATTTCAGCGCTCATTCCATAATTCCGCATAAAATCCCATCTTTAATTCCATGCAGAGTTGAATCTATCAAATATATGGCTGATCCTGAGACAGATGAGGTGTTTGCAAAACTCCGGTTTGTTCCTCTCCATATTAGCCAGGTTCGTTTTGATGACGATGATGATGGTGTTGGTGGTATCGGCGTGTCTGGAACTAAGGATAAACATCAATGTTTTGCGAAAACGTTGACACAATCTGATTCAAACAATGGTGGTGGATTTTCTTGTCCTAGATACTGTGCTGAAACACTTTTTCCTAATTTAGACTATTCAGGTAACCCTCCTTCTCAGGACATTTATCCCAAAGACGTTCATGGCGAAACGTGGCCTTTCAAACACGTTTATAGAGGTACGCCGAGGCGGCATCTGTTGACAACTGGGTGGAGTCCTTTTGTTAGTGACAAGAAAATTGTTTCCGGGGATTCAATTGTGTTTGTGAAAACTGAAAACGGTGATCTTCATGTCGGACTTCGGAGGGCTAAAAGGAAAAGGGATGTTGCACCTGAGCCTTCGTCAGGGATGAAACGTGGCAGTGGAATTGGAATTCGTCCTGATTTACCTTACGGCGTATTTACATCGTATTCGGGAGAGGAAGATAATAAAATTCGAAGAAATGGGAAAGGAAATGGATTGAGAATAAGTGATGGGATGATGGGTAGGGGGAAAGTAAAAGCTCAAGAAGTTATTGAAGCGGTAAAACGTGGTATCAATATGGAGCCGTTTGATGTGGTTTACTATCCTCGAGCAGGTACTCCCGAGTTCTTTGTGAAAATTTCTTTAATTGCAAAAGCACTTCAGATTAGGTGGTGTCATGGAATGAGATTCAAGATGGCCATTGAAACTGAGGACTCGACGAGGATAAGTTGGTTTGTCGGAACTGTTGTTTCTGTTCAAGCTTCTGATCCAGCATGGCCTGAATCTTTTTGGAGATTTCTCCAGGTTGAATGGGATGAACCGGAGTTACTTAAAAATGTGAAAAGGGTGAATCCGTGGCAAGTTGAAATAGTATCGAACATGCCTTCGATCCCTCTTTCCCCTTACGTACCACCAAGGAAGAAATTGAGATTGCCTCAACACCCAAATTATCCCCTTGATGGCCAATTTTCAATGCCAACTTTTCCGAACAATTTTCTAAGTCCCAATATTCCAATTTTTCACTTACCCGAAACTATTCCTGTCGGCATGCAGGGAGCCAGGCATCCTCATTTCGGTTTTTCCTCACCAGACTTTCACCTCAATAAATTTCCATTAGGTCTCTTTAAGCCTAGTTTCCATCAACCGTTTAATCATACTGCTACAACATCGATGACAGTCCCTTATAACTCAGTTTTGCAAAAGCCAGCCACAAGTGATAATGCTTCGTGCTCGCTATCGATATCAACTTCTACACAATCATCAGAGAAATCAGACCATGCGAAGCCCTCGCATCTCATGCTTTTTGGCCAAAAAATTACAATCGAGAACAAAACTTCTTCGGATACAACTGCAGATGCTGGAAATGAAAATATCGAGAAGAATATAACTAATAACTTTTCTGATCTTCATCTACAAGGCTTGCCGAAATGTTCCTCTGGTGATCGGTTCGAGTTGAATCCTAAGAATTAA 1845 0.4179 MKAKRKGGNLSLTEMNKESKTKMRDLNRDVDPQLWHAIAGGMVQMPEVNSKIFYFPQGHAEHACELVNFSAHSIIPHKIPSLIPCRVESIKYMADPETDEVFAKLRFVPLHISQVRFDDDDDGVGGIGVSGTKDKHQCFAKTLTQSDSNNGGGFSCPRYCAETLFPNLDYSGNPPSQDIYPKDVHGETWPFKHVYRGTPRRHLLTTGWSPFVSDKKIVSGDSIVFVKTENGDLHVGLRRAKRKRDVAPEPSSGMKRGSGIGIRPDLPYGVFTSYSGEEDNKIRRNGKGNGLRISDGMMGRGKVKAQEVIEAVKRGINMEPFDVVYYPRAGTPEFFVKISLIAKALQIRWCHGMRFKMAIETEDSTRISWFVGTVVSVQASDPAWPESFWRFLQVEWDEPELLKNVKRVNPWQVEIVSNMPSIPLSPYVPPRKKLRLPQHPNYPLDGQFSMPTFPNNFLSPNIPIFHLPETIPVGMQGARHPHFGFSSPDFHLNKFPLGLFKPSFHQPFNHTATTSMTVPYNSVLQKPATSDNASCSLSISTSTQSSEKSDHAKPSHLMLFGQKITIENKTSSDTTADAGNENIEKNITNNFSDLHLQGLPKCSSGDRFELNPKN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04122 614 Gene3D - 137 241 IPR015300 -
Trre14g04122 614 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Trre14g04122 614 Gene3D - 348 421 - -
Trre14g04122 614 Pfam Auxin response factor 317 393 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre14g04122 614 MobiDBLite consensus disorder prediction 530 548 - -
Trre14g04122 614 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 590 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre14g04122 614 FunFam Auxin response factor 349 421 - -
Trre14g04122 614 Pfam B3 DNA binding domain 139 240 IPR003340 GO:0003677
Trre14g04122 614 MobiDBLite consensus disorder prediction 1 23 - -
Trre14g04122 614 SMART B3_2 139 241 IPR003340 GO:0003677
Trre14g04122 614 CDD B3_DNA 138 239 IPR003340 GO:0003677
Trre14g04122 614 MobiDBLite consensus disorder prediction 530 554 - -
Trre14g04122 614 FunFam Auxin response factor 137 241 - -
Trre14g04122 614 SUPERFAMILY DNA-binding pseudobarrel domain 134 242 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04122 Trre-Chr14 49721872 49723865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04122 28 585 B3 DNA Binding Superfamily AT4G30080 49.212 4.06e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre14g04122 B3 1.8e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04122 - - psat:127130059 796.964