Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04120 ATGGCTAAAGCTTTTGAAACCGAACCTCAAGGTGGTGGTTTACCAAACAAGGACTACCAAGACCCACCACCAGCTCCACTCTTCGACACAACCGAATTCGCCCAATGGTCCTTCTACAGAGCCCTCATTGCCGAATTCGTCGCCACTCTCCTCTTCCTCTACGTCACCGTTTTAACCGTCATTGGCTACAACTCCCAAACTGATCCAGCTCATAACGGCACCCATTGTGACGGTGTCGGTATCCTCGGCATCGCTTGGGCCTTTGGTGGCATGATTTTTGTCCTCGTCTATTGCACTGCCGGCATATCAGGGGGTCACATAAATCCGGCGGTGACATTTGGGCTATTTCTGGCAAGGAAAGTATCATTGATAAGAGCTGTATTATACATGGTGGCACAGTGTTTAGGAGCAATATGTGGGGTTGGATTAGTAAAAGCTTTTCAGAAAAGTTACTATAACAGATATAAAGGTGGTGCTAACATGTTAAATGATGGTTATAGTAAAGGAACTGGTTTAGGTGCTGAGATTATTGGAACTTTTGTTCTTGTTTACACCGTTTTCTCTGCAACCGATCCAAAAAGAAGTGCTAGAGATTCTCATGTTCCTGTTTTGGCACCACTTCCAATTGGGTTTGCTGTGTTTATAGTTCATCTTGCTACAATTCCTATCACTGGAACTGGTATCAATCCTGCTAGAAGTTTTGGTGCTGCTGTGATTTACAACAACGAGAAAGCTTGGGATGACCAATGGATTTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATTTACCACCAGTTTGTGTTGAGAGCACAAGCAGTGAAGGCTTTGGGTTCTTTCAGGAGTTCTTCAAATCTGTAA 867 0.4452 MAKAFETEPQGGGLPNKDYQDPPPAPLFDTTEFAQWSFYRALIAEFVATLLFLYVTVLTVIGYNSQTDPAHNGTHCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFQKSYYNRYKGGANMLNDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAVKALGSFRSSSNL 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04120 288 MobiDBLite consensus disorder prediction 1 21 - -
Trre14g04120 288 NCBIfam MIP family channel protein 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 16 277 IPR034294 -
Trre14g04120 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Trre14g04120 288 Gene3D Glycerol uptake facilitator protein. 25 288 IPR023271 -
Trre14g04120 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Trre14g04120 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre14g04120 288 FunFam Probable aquaporin PIP1-2 25 286 - -
Trre14g04120 288 Pfam Major intrinsic protein 33 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04120 Trre-Chr14 49683710 49684998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04120 17 288 Major Intrinsic Protein MIP AT3G54820 83.456 5.70e-171 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04120 K09872 - twl:119984821 489.189