Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04115 ATGCTAATTGCCATGTCTGTGTTATTGTCTTCATATCATAATGATGGTTATGGATGTGGAGATTTTTACTTGAATTCTTCATTCAGTTGTTCTGAAAGTTTTATTCCCTTGTATCTTTTTGACAGCATCACCATATATTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCATCTCGCACCTGTGACTGTACAATTCCAGCAAGGTCTCGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTATTAAAGGTGGGTGACATGGATGTCTACCCTCTAGCGGTGAAGGCAGATGCATCATCTCATAATCATGATGGATCAAATGAAACTGTGACATCTGGCAAGACAAATTCTCAGATAACTCAAGCGGTGTTCGAGAAGGATAAAGGAGAATTTCGGGTAAAAGTTGTTAAGCAAATTTTGTCTATAAATGGGATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAAAATGGCGTGGATGACAATGAACAAGGAAAGGAATGTGTGATCTGCTTGTCGGAGCCTCGTGACACAATCGTGCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTCAAGAGTAA 732 0.4126 MLIAMSVLLSSYHNDGYGCGDFYLNSSFSCSESFIPLYLFDSITIYFFAKEDEGCILTPTKENHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLLKVGDMDVYPLAVKADASSHNHDGSNETVTSGKTNSQITQAVFEKDKGEFRVKVVKQILSINGMRYELQEIYGIGNSVENGVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTQE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04115 243 CDD mRING-HC-C3HC5_MGRN1-like 187 228 IPR045195 -
Trre14g04115 243 PANTHER MAHOGUNIN 42 238 IPR045194 GO:0061630
Trre14g04115 243 ProSiteProfiles Zinc finger RING-type profile. 189 228 IPR001841 -
Trre14g04115 243 SUPERFAMILY RING/U-box 188 233 - -
Trre14g04115 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 238 IPR013083 -
Trre14g04115 243 Pfam Zinc finger, C3HC4 type (RING finger) 187 233 - -
Trre14g04115 243 FunFam probable E3 ubiquitin-protein ligase LOG2 173 238 - -
Trre14g04115 243 SMART ring_2 189 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04115 Trre-Chr14 49660091 49661077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04115 34 208 C3H Transcription Factor Family AT3G09770 56.216 6.28e-65 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04115 - - aprc:113862864 357.066