Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04114 ATGGGAAACATCTCAAGCAACGGAGGTAACAACCGTCGTCGACACAGCGGTGGAAGTTCAAGGAGAAGTCATCCACCACCACCACCTGTAACACCACAACCTGAAATCGCAACACATCCATTTGTTTACCCTGGTGCTTCACCGTACCCAAATCCACCTATGCATTATCCTCAGTATCATTATCCTGGTTATTATCCACCGCCGGTACCGATGCATCATCCTCATCAACATCCTCATCCACATATGGACCCTGATTGGGTTTCTAGATATTATCCTTGTGGACCGGTTATGAACCAACCTGCACCGTTTGTTGAGCATCAGAAAGCTGTTACTATAAGGAATGATATTAATATTAAGAAAGAGACTCTTGCTATTTCACCGGATGAACAAAACCCTGGTTTTTTTCTTGTTTCGTTTACCTTTGATGCCACCGTTTCTGGAAGCATCACCATATATTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACACCGACCAAGGAAAACCATCTCGCACCTGTGACTGTACAATTCCAGCAAGGTCTCGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTATTAAAGGTGGGTGACATGGATGTCTACCCTCTAGCGGTGAAGGCAGATGCATCATCTCATAATCATGATGGATCAAATGAAACTGTGACATCTGGCAAGACAAATTCTCAGATAACTCAAGCGGTGTTCGAGAAGGATAAAGGAGAATTTCGGGTAAAAGTTGTTAAGCAAATTTTGTCTATAAATGGGATGAGGTATGAACTGCAGGAGATATATGGTATTGGAAATTCAGTGGAAAATGGCGTGGATGACAATGAACAAGGAAAGGAATGTGTGATCTGCTTGTCGGAGCCTCGTGACACAATCGTGCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTCAAGAGTAA 1050 0.4362 MGNISSNGGNNRRRHSGGSSRRSHPPPPPVTPQPEIATHPFVYPGASPYPNPPMHYPQYHYPGYYPPPVPMHHPHQHPHPHMDPDWVSRYYPCGPVMNQPAPFVEHQKAVTIRNDINIKKETLAISPDEQNPGFFLVSFTFDATVSGSITIYFFAKEDEGCILTPTKENHLAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLLKVGDMDVYPLAVKADASSHNHDGSNETVTSGKTNSQITQAVFEKDKGEFRVKVVKQILSINGMRYELQEIYGIGNSVENGVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTQE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04114 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 344 IPR013083 -
Trre14g04114 349 Pfam Zinc finger, C3HC4 type (RING finger) 293 339 - -
Trre14g04114 349 CDD mRING-HC-C3HC5_MGRN1-like 293 334 IPR045195 -
Trre14g04114 349 ProSiteProfiles Zinc finger RING-type profile. 295 334 IPR001841 -
Trre14g04114 349 PANTHER MAHOGUNIN 1 344 IPR045194 GO:0061630
Trre14g04114 349 MobiDBLite consensus disorder prediction 1 43 - -
Trre14g04114 349 FunFam probable E3 ubiquitin-protein ligase LOG2 279 344 - -
Trre14g04114 349 SMART ring_2 295 333 IPR001841 -
Trre14g04114 349 SUPERFAMILY RING/U-box 288 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04114 Trre-Chr14 49660091 49664930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04114 84 314 C3H Transcription Factor Family AT3G09770 61.017 1.23e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04114 - - aprc:113862864 499.975