Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04106 ATGGATTCGGTGCCTTATAAGGGATTGTTCCACACATTCTTCGTTCTCAATTTTGTTTTTGTTCAACCCTTTGTTTCTGCTTCAGGAAATGCAGCTGAGTTGTTCGAGAGAGCATCTCAAAGTATAAAAGGGAGACATTATACTGAGGCACTTAATGATCTAAATTCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTCCCGTGCTTCAGTTCTTCGTCAGTTATGCAGATATGAGCAATCTGAGAGGAGTTACAAAAAGTTTCTGGAGTTAAAACCCGGACATTCAGCTGCAGAAAAGGAGCTTTCTCAGCTATTGCAAGCTCAAAGTGCGCTAGAAACAGCTCAGTCCCTCTATGATTCAGGGAACTTCACAAAATCGTTGGAATACATTGATAAAGTTGTTCTTGTTTTCTCTTCTGCATGTACTAAGGCTAAGCTTCTTAAAGTGAGGTTGTTGATAGCTGATAAAGAGTATGAAGGTGCAATTGCTGAGTCTGGTTTTCTTCTCAAGGAAGATGAAAATAATTTAGAAGCATTATTATTACGTGGCCGTGCGTATTACTATTTAGCTGATCATGATGTTGCTACAAGGCATTACCAGAAAGGTCTTCGCCTAGATCCGGAGCATAGTGAACTGAAAAAAGCATACTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCTAGTAAGGGCAAGCTACGGGTGGCAGTGGAGGAATTCAAGAGTGCACTAGCTGTTGACCCTGACCATCTTGCACACAATGTAAATCTTCATCTTGGCTTGTGTAAAGTGCTAGTCAGACTTGGCAGAGGAAAAGATGCGTTGAACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAGCTTATTGATGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACGGAGGACTGGGAGGGTGCTGTGGAAGATCTGAAATCAGCTGCTCAAAAATCTCCACAGGATATGAATATCCGTGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAGATTAGCAAACGCAAGGATTACTACAAGATTTTGGAAATTTCAAAGCATGCTTCCGCTGCTGAGATAAAACGTGCATATAAGAAACTTGCCTTACAATGGCACCCGGATAAGAATGTTGACAAAAGAGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGCTGCATATGAGATTCTAAGTGATGAAGACAAACGCACAAGATACGACAGAGGGGAGGACCTTGAAGAATCAGGAATGGGTGGTGGCGGCGGTGGAGGCTTCAATCCCTTCGGTGGAGGCGGACAACAATTTCACTTTACTTTTGATGGTGGCTTCCCTGGTGGAGGCTTTCCCGGCGGCGGTGGCGGTTATGAGTTTCATTTTTGA 1404 0.4224 MDSVPYKGLFHTFFVLNFVFVQPFVSASGNAAELFERASQSIKGRHYTEALNDLNSAIEADPNLSEAYLSRASVLRQLCRYEQSERSYKKFLELKPGHSAAEKELSQLLQAQSALETAQSLYDSGNFTKSLEYIDKVVLVFSSACTKAKLLKVRLLIADKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHYQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVAVEEFKSALAVDPDHLAHNVNLHLGLCKVLVRLGRGKDALNSCSEALKINEELIDALVQRGEAKLLTEDWEGAVEDLKSAAQKSPQDMNIREALMRAEKALKISKRKDYYKILEISKHASAAEIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEILSDEDKRTRYDRGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGYEFHF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04106 467 FunFam DnaJ domain containing protein 23 349 - -
Trre14g04106 467 SMART dnaj_3 351 410 IPR001623 -
Trre14g04106 467 ProSiteProfiles TPR repeat profile. 65 98 IPR019734 GO:0005515
Trre14g04106 467 FunFam DnaJ subfamily C member 7 350 459 - -
Trre14g04106 467 Gene3D Tetratricopeptide repeat domain 26 349 IPR011990 GO:0005515
Trre14g04106 467 Pfam Tetratricopeptide repeat 240 305 - -
Trre14g04106 467 SUPERFAMILY Chaperone J-domain 346 454 IPR036869 -
Trre14g04106 467 PRINTS DnaJ domain signature 390 410 IPR001623 -
Trre14g04106 467 PRINTS DnaJ domain signature 372 387 IPR001623 -
Trre14g04106 467 PRINTS DnaJ domain signature 354 372 IPR001623 -
Trre14g04106 467 PRINTS DnaJ domain signature 410 429 IPR001623 -
Trre14g04106 467 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Trre14g04106 467 Gene3D DnaJ domain 350 458 IPR036869 -
Trre14g04106 467 SUPERFAMILY TPR-like 45 347 IPR011990 GO:0005515
Trre14g04106 467 Pfam Tetratricopeptide repeat 181 213 IPR013105 -
Trre14g04106 467 CDD DnaJ 352 407 IPR001623 -
Trre14g04106 467 ProSitePatterns Nt-dnaJ domain signature. 395 414 IPR018253 -
Trre14g04106 467 Pfam Tetratricopeptide repeat 45 98 - -
Trre14g04106 467 SMART tpr_5 31 64 IPR019734 GO:0005515
Trre14g04106 467 SMART tpr_5 264 297 IPR019734 GO:0005515
Trre14g04106 467 SMART tpr_5 298 331 IPR019734 GO:0005515
Trre14g04106 467 SMART tpr_5 65 98 IPR019734 GO:0005515
Trre14g04106 467 SMART tpr_5 111 144 IPR019734 GO:0005515
Trre14g04106 467 SMART tpr_5 180 213 IPR019734 GO:0005515
Trre14g04106 467 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 13 467 IPR044620 -
Trre14g04106 467 Coils Coil 388 408 - -
Trre14g04106 467 ProSiteProfiles dnaJ domain profile. 352 418 IPR001623 -
Trre14g04106 467 Pfam DnaJ domain 352 415 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04106 Trre-Chr14 49593866 49597791 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04106 348 415 C2H2 Transcription Factor Family AT1G74250 44.444 6.74e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04106 K09523 - gmx:100804685 711.064