Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04104 ATGAATATACTTGTTGACCCCTTTTCACTATCCTCTTCCACTAGTGGTTTTGACAAAATCCAAAATATAAACCCTAATCCACCACAAACCAACAAGAAGAAAAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTCATTGCTCTATCGCCAAAGACCCTAATGGCGACGAACCGATTTGTATGTGAAATATGCAACAAAGGGTTCCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCACAACTTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCAAGAAAAAAGGTATACATATGTCCGGAGAAAACCTGCGTCCACCATGACGCATCCAGGGCGCTCGGAGACCTTACCGGAATAAAGAAACATTTTAGTAGAAAACATGGAGAAAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACAAAAACTTGTGGTACTAGAGAATATAAGTGTGACTGTGGTACCCTCTTCTCTAGGAAGGATAGCTTTATAACACACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGACACACCTCACTCACTCCTCCAACAACACTAAATTTCAAGAATGAAGAATCAAATATGATGAACACACAAAGCACTAGTTTGTCACATAATGGATTAATATCATGTCAAGGACTTCAAAATCTTCCACAATATGGTTCTCCACATGCAGTGTTTCATCATCATGAACAAAGACCAAACTTGTCATTGTGGCTAAACCAAGAAAATCAACAAATTAATCATCATCAAATTCAACATGATTCACTTGATGATCATGTTTCATCAAGTTTTTGTGATGTTATGCAAATGCAACAAACTAGTACTGCACCAATGTCAGCTACTGCACTTCTTCAAAAAGCAGCTCAAATGGGTTCAACAAGAAGTAACACTAATAATCCTTCCATTTTTAGTGGAAGTTTTGGTTTAATGAGTTCATCTTCAACACAAACTAATAATAGTACTCTAAACCAAAACCATGATGAGGTTAATATGGTCATTAATCAAAACATGAAGCAGCATGAGAATTATAATATTCTTCCAAGTAGTAGTAATACTAATATTGCAGCTATGATTGGTAATGGTAATTCAAGTAATGGATTTAGAGATTTTCTTGGTGTGAGTAATGATGATGATCATCATCCATTTTTACCTCAAGAGCTTGCAAAGTTTGCTTCAATGACTTCATCTATGATGAGTTTCAATGAATTCAATGCATGA 1275 0.3639 MNILVDPFSLSSSTSGFDKIQNINPNPPQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDASRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARHTSLTPPTTLNFKNEESNMMNTQSTSLSHNGLISCQGLQNLPQYGSPHAVFHHHEQRPNLSLWLNQENQQINHHQIQHDSLDDHVSSSFCDVMQMQQTSTAPMSATALLQKAAQMGSTRSNTNNPSIFSGSFGLMSSSSTQTNNSTLNQNHDEVNMVINQNMKQHENYNILPSSSNTNIAAMIGNGNSSNGFRDFLGVSNDDDHHPFLPQELAKFASMTSSMMSFNEFNA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04104 424 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 412 IPR031140 -
Trre14g04104 424 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Trre14g04104 424 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre14g04104 424 MobiDBLite consensus disorder prediction 12 36 - -
Trre14g04104 424 Gene3D Classic Zinc Finger 57 84 - -
Trre14g04104 424 FunFam protein indeterminate-domain 12-like 40 108 - -
Trre14g04104 424 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Trre14g04104 424 Gene3D Classic Zinc Finger 94 185 - -
Trre14g04104 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Trre14g04104 424 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Trre14g04104 424 SMART c2h2final6 61 83 IPR013087 -
Trre14g04104 424 SMART c2h2final6 137 157 IPR013087 -
Trre14g04104 424 SMART c2h2final6 102 132 IPR013087 -
Trre14g04104 424 MobiDBLite consensus disorder prediction 12 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04104 Trre-Chr14 49582433 49584480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04104 3 412 IDZ Gene Family AT5G03150 49.507 1.34e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g04104 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04104 K25870 - tpra:123892932 744.962