Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g04103 ATGGACAAAAATCCTCATTCCGAAATCCAACTCCCTCCTGGATTTAGATTTCATCCTTCTGATGAAGAACTCATTGTTCACTATCTAAGAAACAAAGTAACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTACAATCCATGGGAGCTTCCAAGTAAAGCTTTGTTTGGAGAGGAAGAGTGGTATTTCTTTACTCCAAGGGACAGAAAGTATCCCAAAGGATTGAGGCCTAATAGAGCAGCTGGTGCAGGTTATTGGAAAGCTACTGGAACTGATAAACCTATTCTTACTTCATGTGCGTTGAAAAGCATTGGAGTCAAGAAAGCCCTTGTGTTCTATAAGGGTCGTCCACCAAAAGGATCTAAAACTGACTGGATCATGAATGAGTATAGGTTGCATGATTCAATGATCTCAAATTCTAAGCATAGTGGTTCTATGAGACTGGATGAGTGGGTGTTATGCCGTGTTCGACAAAAAATCGGAAGTCCAAGAAGCAGTTGGGAAGATTCAAATGTACTAAGTTATGAACCAACAAATCAGTTTCAACAAATGAATGAGATCTCTAATCCTGAACCAGTCAAAAACTATGTGCAAAATGAATACCCGATGTTACCTTATATTTTGGCTTCTAAGATTGTTCTGCCTAACTCCATTGGTATGGCTTCAGACAATGTAAAGCCCCATGCTTCATTTTATGAAGACAACTTAAACATAATAGGAGCACAGTTCTTATCGTCTGCAACTGAGGGATTGTTCAATCCGCTGAAGAGAAAAGCTGTCGAAGATGATATGGAGATGGACTTTTATGCTGTCCTCAATAAAAATCTAAGCAGAGAAGTTGATGATGGGAAGGAAAGACTTGAGAAAGATTTAAGCAAAGAGAACAATTTCTACAACTTTGATCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGCCTTCACTGGATATACATAA 984 0.3852 MDKNPHSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEEEWYFFTPRDRKYPKGLRPNRAAGAGYWKATGTDKPILTSCALKSIGVKKALVFYKGRPPKGSKTDWIMNEYRLHDSMISNSKHSGSMRLDEWVLCRVRQKIGSPRSSWEDSNVLSYEPTNQFQQMNEISNPEPVKNYVQNEYPMLPYILASKIVLPNSIGMASDNVKPHASFYEDNLNIIGAQFLSSATEGLFNPLKRKAVEDDMEMDFYAVLNKNLSREVDDGKERLEKDLSKENNFYNFDQWTSIIQPQELNSLAFTGYT 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g04103 327 FunFam NAC domain-containing protein 72-like 20 170 - -
Trre14g04103 327 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Trre14g04103 327 Gene3D NAC domain 20 167 IPR036093 GO:0003677|GO:0006355
Trre14g04103 327 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 234 - -
Trre14g04103 327 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Trre14g04103 327 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g04103 Trre-Chr14 49558842 49560151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g04103 7 170 NAC Transcription Factor Family AT1G69490 67.073 1.13e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre14g04103 NAM 6.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g04103 - - cam:101491216 577.4